Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4929g00002 ATGGCATTTCGATTTGGGTTCCTTCTTCTTGCTTTGCTCATTTGTTTGAATGCCAATTCCGTGGATTCAGATGATGGAGCAACATTGTTAGAGATTAAGAAGTCATTCAGGGATGTGGATAACGTTCTATATGATTGGACAGACTCACCATCATCAGATTATTGTGCCTGGAGAGGCATCTCATGTGATAATGTAACCTTCAATGTTGTTGCACTCAATCTTTCAGGGTTAAATCTTGATGGTGAAATTTCGCCTGCAATCGGGAGCCTTAACAGCTTGGTCTCTATTGACCTAAAAGAAAACAGACTATCAGGGCAGATACCCGATGAGATTGGTGACTGTTCTTCTTTGAAAAGCCTGGACTTGTCATTTAATGAAATACGGGGTGATATACCATTTTCAATTTCCAAGTTGAAACAACTGGAAAATCTGATTTTGAAAAATAATCAGTTAATTGGACCAATACCTTCAACTTTGTCTCAGATTCCCAACTTGAAGATTCTAGACCTGGCACAAAATGAGCTTAATGGTGAAATCCCAAGGCTTATATACTGGAATGAAGTTTTGCAGTATCTGGGCTTGCGTGGGAACAAATTGGTTGGTTCACTATCGCCAGACATGTGCCAGTTAACTGGATTGTGGTATTTTGATGTGAGAAACAATAGCCTAACAGGAAGTATTCCTGAAAACATAGGCAACTGTACTGCCTTCCAGGTCTTGGATTTATCTTACAACCAGTTAACCGGAGAGATACCATTCAACATTGGATTTCTGCAAGTAGCGACCTTGTCATTGCAAGGCAATAAACTCTCTGGAAATATTCCATCAGTGATCGGTCTCATGCAAGCACTTGCTGTCTTAGACTTGAGTTGTAACATGTTAAGTGGACCAATCCCTCCTATCCTGGGAAATTTGACTTACACAGAAAAATTGTACTTGCATGGAAACAAGCTGACTGGTTTCATTCCCCCAGAGCTTGGAAATATGACAAAGCTTCACTACTTGGAACTAAATAATAACCATTTAAGTGGACATATCCCGCCAGATCTTGGAAAACTTACTGATCTGTTCGACTTAAATGTTGCTAACAACAACCTTGAGGGGTCAATTCCTGGCAACATTAGCTCGTGTAAAAATCTTAACAGCCTCAATGTGCATGGGAACAAGTTGACTGGAACAATTCCCCCTGCTTTGCAGAGCTTGGAGAGTATGACTTATTTGAATCTTTCTTCCAACAATCTTCAAGGTTCCATTCCAATTGAACTGTCACGGATTGGTAATTTGGATACATTGGATATTTCAAACAATAATATAGTTGGCTCCATTCCTTCTTCCCTCGGTGACTTGGAACATCTTCTGAAGCTGAATCTGAGCAGAAATAATTTAACAGGATTTATTCCAGCAGAATTTGGTAATCTTAGGAGTGTTATGGACATAGATCTTTCAAATAATCAACTCTCTGGCTTGATTCCTGAAGAACTTAGTCAGCTTCAGAACATTATATCCTTGAGGCTCGAAAACAACAAATTAACCGGGGATGTGACGTCACTTGTAATTTGCCTTAGTCTTTCTCTGCTTAACGTGTCCTATAACAAACTAGTTGGTGTTATTCCCACAAGCAACAACTTTACCAGGTTCCCCCCTGACAGTTTCGTTGGAAACCCTGGTCTTTGTGGTAATTGGTTGAATTTGCCCTGCCATGGTTCTCGCCCTGTAGAGCGAGTTACATTATCTAAGGTGGCTATCCTGGGAATTACTCTAGGTGCACTTGTAATTATTCTTATGATATTGCTGGCAGCTTGCCGACCACACAATCCATCTCCTTTTCCTGATGGATCACTCGACAAACCAGTTAATTTCTCACCTCCAAAACTAGTGATTCTTCATATGAATATGGCACTTCATGTGTATGAGGATATCATGAGGATAACTGAAAACCTGCACGAGAAGTATATAATTGGATATGGTGCATCAAGTACAGTTTATAAATGTGTTCTTAAGAATTGCAAGCCAGTGGCTATCAAGAGGCTCTATTCTCACCATCCAGATTGCTTGAAAGAATTTGAGACTGAACTTGCGACAGTTGGAAGCATTAAGCACCGGAATCTGGTCAGTCTTCAAGGCTACTCTTTGTCCCCATATGGCCACCTTTTGTTTTACGACTACATGGAAAATGGCAGTCTATGGGATCTTCTTCATGGACCTACCAAAAAGAAAAAGCTTGACTGGGATCTGCGTCTAAAAATAGCACTTGGAGCAGCCCAAGGGCTTGCTTATCTACACCATGATTGCAGTCCACGTATCATCCACAGGGATGTGAAATCTTGTAATATTTTATTAGATGCAGACTTTGAGCCCCATCTCATTGATTTTGGGATTGCCAAAAGTCTCTGCCCCTCGAAGTCTCATACTTCTACTTACATATTGGGCACAATTGGCTATATAGACCCTGAGTATGCTAGAACTACCCGGCTCACTGAGAAGTCTGATGTGTATAGCTATGGTATTGTTTTACTTGAGTTGCTAACTGGGAAGAAAGCTGTTGACAATGAATCCAACCTCCATCACCTGATTTTGTCCAAGACTGCAAACAATGCTGTAATGGAAACCGTTGATCCTGATATTACTGCCACATGCAAGGACCTGGGAGCAGTAAAAAAGGTTTATCAACTTGCTCTATTATGCACAAAGAGGCAGCCATGTGATAGGCCCACAATGCATGAAGTGACACGTGTGCTGGGAAGTCTTGTGTCATCAATCACCCCACCAAAACAACCAGCTCCACTGCCACCACCTGCATCACACCAACCAGCTGCTAAAGTGCCATGCTACATGGATGAATATGCAAATCTCAAGACACCACACTTGGTTAACTATCCATCCATGAGCACCTCTGATGCTCAGCTCTTCCTCAAGTTTGGAGAGGTAATCTCCCAGAACAGTGAGTGA 2949 0.414 MAFRFGFLLLALLICLNANSVDSDDGATLLEIKKSFRDVDNVLYDWTDSPSSDYCAWRGISCDNVTFNVVALNLSGLNLDGEISPAIGSLNSLVSIDLKENRLSGQIPDEIGDCSSLKSLDLSFNEIRGDIPFSISKLKQLENLILKNNQLIGPIPSTLSQIPNLKILDLAQNELNGEIPRLIYWNEVLQYLGLRGNKLVGSLSPDMCQLTGLWYFDVRNNSLTGSIPENIGNCTAFQVLDLSYNQLTGEIPFNIGFLQVATLSLQGNKLSGNIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLTYTEKLYLHGNKLTGFIPPELGNMTKLHYLELNNNHLSGHIPPDLGKLTDLFDLNVANNNLEGSIPGNISSCKNLNSLNVHGNKLTGTIPPALQSLESMTYLNLSSNNLQGSIPIELSRIGNLDTLDISNNNIVGSIPSSLGDLEHLLKLNLSRNNLTGFIPAEFGNLRSVMDIDLSNNQLSGLIPEELSQLQNIISLRLENNKLTGDVTSLVICLSLSLLNVSYNKLVGVIPTSNNFTRFPPDSFVGNPGLCGNWLNLPCHGSRPVERVTLSKVAILGITLGALVIILMILLAACRPHNPSPFPDGSLDKPVNFSPPKLVILHMNMALHVYEDIMRITENLHEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHHPDCLKEFETELATVGSIKHRNLVSLQGYSLSPYGHLLFYDYMENGSLWDLLHGPTKKKKLDWDLRLKIALGAAQGLAYLHHDCSPRIIHRDVKSCNILLDADFEPHLIDFGIAKSLCPSKSHTSTYILGTIGYIDPEYARTTRLTEKSDVYSYGIVLLELLTGKKAVDNESNLHHLILSKTANNAVMETVDPDITATCKDLGAVKKVYQLALLCTKRQPCDRPTMHEVTRVLGSLVSSITPPKQPAPLPPPASHQPAAKVPCYMDEYANLKTPHLVNYPSMSTSDAQLFLKFGEVISQNSE 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4929g00002 982 Gene3D Ribonuclease Inhibitor 22 185 IPR032675 -
Gabi4929g00002 982 Gene3D Ribonuclease Inhibitor 346 441 IPR032675 -
Gabi4929g00002 982 Gene3D Ribonuclease Inhibitor 442 567 IPR032675 -
Gabi4929g00002 982 SMART LRR_typ_2 90 114 IPR003591 -
Gabi4929g00002 982 SMART LRR_typ_2 449 472 IPR003591 -
Gabi4929g00002 982 SMART LRR_typ_2 401 425 IPR003591 -
Gabi4929g00002 982 SMART LRR_typ_2 210 234 IPR003591 -
Gabi4929g00002 982 SMART LRR_typ_2 329 353 IPR003591 -
Gabi4929g00002 982 SMART LRR_typ_2 162 186 IPR003591 -
Gabi4929g00002 982 SMART LRR_typ_2 473 496 IPR003591 -
Gabi4929g00002 982 SUPERFAMILY L domain-like 48 304 - -
Gabi4929g00002 982 Gene3D Ribonuclease Inhibitor 186 258 IPR032675 -
Gabi4929g00002 982 ProSiteProfiles Protein kinase domain profile. 647 917 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4929g00002 982 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Gabi4929g00002 982 Pfam Leucine rich repeat 359 414 IPR001611 GO:0005515
Gabi4929g00002 982 Pfam Leucine rich repeat 427 486 IPR001611 GO:0005515
Gabi4929g00002 982 Pfam Leucine rich repeat 116 175 IPR001611 GO:0005515
Gabi4929g00002 982 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 187 296 - -
Gabi4929g00002 982 SUPERFAMILY Protein kinase-like (PK-like) 625 913 IPR011009 -
Gabi4929g00002 982 SUPERFAMILY L domain-like 260 546 - -
Gabi4929g00002 982 Gene3D Ribonuclease Inhibitor 259 345 IPR032675 -
Gabi4929g00002 982 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 723 924 - -
Gabi4929g00002 982 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 161 914 - -
Gabi4929g00002 982 ProSitePatterns Serine/Threonine protein kinases active-site signature. 768 780 IPR008271 GO:0004672|GO:0006468
Gabi4929g00002 982 SMART serkin_6 647 913 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4929g00002 982 ProSiteProfiles Leucine-rich repeat profile. 116 139 IPR001611 GO:0005515
Gabi4929g00002 982 ProSitePatterns Protein kinases ATP-binding region signature. 653 675 IPR017441 GO:0005524
Gabi4929g00002 982 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 22 186 - -
Gabi4929g00002 982 Pfam Protein kinase domain 648 910 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4929g00002 982 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 618 722 - -
Gabi4929g00002 982 Gene3D Phosphorylase Kinase; domain 1 621 722 - -
Gabi4929g00002 982 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 297 569 - -
Gabi4929g00002 982 Gene3D Transferase(Phosphotransferase) domain 1 723 922 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4929g00002 Gabi-Chr4929 39961 49516 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4929g00002 92 981 Receptor kinase-like Gene Family AT5G07180 65.208 0.0 1134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Gabi4929g00002 Pkinase 2.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4929g00002 K20718 - gmx:100782307 1786.16