Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4929g00001 ATGAACCTGCGCAAGGGCTCCAAAGTTTGGGTCCAATACAGGGATTCAGCCTGGGTGGCTGCTGAAGTGGTTGATTCCGATGGAAACCGGTTCCAGCTCGCAACTGATTCTGGCAAGGAGGTTTTTGCTTCGCCGGAGAAACTGTTTCCAAGGGATGCGGATGAAGAGGAGCATGGGGGATTCGAAGATATGACGAGGTTGGCTTACTTGAATGAACCAGGAGTGTTGTACAATCTTCGTAGAAGATATGCTGTCAATGATATTTATACATATACAGGAAGCATCTTAATAGCTGTTAATCCCTTCACGAAGCTTCCTCACTTGTATGATATCCATATGATGGAGCAGTATAAGGGAGCTCCATTTGGTGACCTTAGCCCACATGTTTTTGCTGTTGCTGATGCATCTTACAGAGCAATGTTGAACGAAGGTAAAAGTCAATCTATCTTGGTCAGTGGTGAAAGTGGTGCTGGAAAAACTGAGACAACAAAATTGATTATGCAGTATCTTACCTTTGTTGGTGGACGTGTGGCCAGTGATGATAGAACAGTCGAACAACAAGTTCTTGAATCGAATCCACTTTTAGAGGCATTTGGTAATGCAAGGACGGTTAGGAATGACAATTCAAGTCGATTTGGGAAGTTTGTTGAAATTCAGTTTGATTCAAATGGTAGAATCTCTGGTGCTGCAATTAGAACTTACTTACTGGAAAGATCTCGAGTAGTACAGATAACGGATCCAGAAAGAAATTATCACTGCTTTTATCAGTTGTGTGCATTTGAAAGGAATGCAGAGAAGTATAAGTTAGGACATCCGAGTCACTTCCACTATTTAAATCAAAGTAAAATCTATGAACTAGATGGTGTTAGCAATGCTGAAGAATACGTGAAGACGAGGAGGGCAATGGATATTGTTGGAATTATTCATGAGGATCAGGAAGCCATATTTCGTGTCTTAGCTGCAATTTTACATTTGGGAAACATTGAATTTTCTCCTGGAAAAGAGCATGACTCGTCAGTAATAAAGGATGAAAAATCAAGATTTCATATGCAGATGGCTGCTAATCTTTTCATGTGTGATGTTGACCTACTGCTAGCAACATTGTGTACTCGTTCAATACAAACTCGAGAAGGAATTATTGTGAAAGCCCTTGATTGCAATGCTGCTGTTGCTGGCCGGGATGCTTTGGCAAAAACTGTTTATGCTCACTTATTTGATTGGCTTGTTGACAAGATCAATAGGTCTGTTGGGCAAGATATCAATTCCCAGATACAAATCGGAGTTTTGGATATTTATGGTTTTGAGTGCTTTAAGGATAACAGTTTTGAGCAATTCTGCATCAATTTTGCAAATGAAAAGCTTCAGCAACATTTCAATGAGCATGTATTCAAGATGGAGCAGGAGGAGTATGGAAACGAAGAAATTATCTGGAGTTACATTGAATTTGTAGACAACCTAGATGTTTTAGATTTGATTGAAAAGAAGCCCATTGGTATCATTGCTCTTTTGGATGAAGCTTGCATGTTTCCGAAATCAACACATGAAACATTCTCAACCAAGTTGTTTCAGCATTTCCGGTCTCACCCTAGGTTGGAAAAGGAAAAGTTTTCGCAAACAGATTTTACCATTTCTCATTATGCTGGAAAGGTCACTTATCACACAGAGACCTTTTTAGACAAAAATCGTGATTATATTGTTGTAGAACATTGTAATCTATTTTCATCATCAAAATGCCCCTTTGTGTCTGGTCTTTTTCCTTTGCTACCAGAGGATTCTTCAAGATCATCGTACAAATTTTCTTCAGTAGCTTCCAGATTTAAGCAACAACTTCAAGCACTCATGGAGACCCTTAAGTCAACAGAGCCTCATTACATACGATGTGTGAAGCCCAATTCTTTGAATCGACCACAAATATTTGAGAATGCAAGCATCATACACCAATTACGCTGTGGGGGCGTCCTTGAAGCTGTTCGAATAAGTCTGGCAGGTTACCCCACTCGAAGAACTTACTCACAGTTTGTAGACCGCTTTGGGTTAATAGCCCCTGATTTTATGGATGGAAGTTATGATGATAAAGTTGCAACTGAGAAAATTTTGCAAAAGCTCAAACTTGAGAACTTTCAGTTGGGTAGGACCAAAGTATTTCTCAGGGCTGGTCAAATTGGCGTTTTAGACTCCAAACGCGCTGAAGTTTTGGACAATGCTGCAAAGTGTATTCAGTGTCGACTGAGGACATTTATTGCACACAGGGATTTTATCTCAGTCAGAGCAGCTGCATTTTCTCTTCAGGCATGCTGCAGGGGATACGTTGCCCGAAAGATGTATGCTGCTAAAAGGGAGACGGCAGCGGCTGTCTCCATTCAGAAATATATTCGTATGTGGCTAACGAGGCATGCTTACTTGAAACTATATTCTTCTGCTATTATCATACAATCCCATGTTCAAGGTTTCACAACTCGCCAAAAATTTTTGCGTGGAAAAGAACATAAAGCTGCTACTCTTTTTCAGGCCTGTTGGAGGATGTCGAAGGTTAGATCAGCTTTCCGGCTACATCAAGCTTCAATTGTGACAATACAATGCCTTTGGCGGCGTAGACAAGCAAAACGGGAGCTTCGTAGACTTAAACAAGAGGCTAATGAAGCTGGTGCCCTCCGTGAAGCTAAGAATAAACTTGAGAAGCAATTGGAACAACTCACATGGCGTTTGCATCTTGAAAAAAAAAAAAGGGTTTCTAATGAAGAGGCTAAGCAAATAGAGATTTCCAAACTTCAAAAGATGTTAGAAGCTCTGAATCTTGAATTAGATGCAGCTAAATTGGCAACAATTAATGAGTGCAACAAGAATGCAGTTCTGCAAAATCAATTGGAATTGTCAGCAAAGGAAAAATCTGCTTTAAAAAGAGAGCTAGCTGCAGTAGATGAAGTACGAAAGGAAAATGCTGCATTGAAGGTTTCTTTGGATTCCTTTGAAAAGAAGTACGTAGCTTTAGAGCTTCAGCTTATGAATGCTCAAAAAGGCCGTGATGAAACCATTGAGAAGCTGAGGGAGCTTGAACAGAAGTGCTCTCAACTCGAGCAAAATGTTAAAAG 3089 0.4024 MNLRKGSKVWVQYRDSAWVAAEVVDSDGNRFQLATDSGKEVFASPEKLFPRDADEEEHGGFEDMTRLAYLNEPGVLYNLRRRYAVNDIYTYTGSILIAVNPFTKLPHLYDIHMMEQYKGAPFGDLSPHVFAVADASYRAMLNEGKSQSILVSGESGAGKTETTKLIMQYLTFVGGRVASDDRTVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQFDSNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCAFERNAEKYKLGHPSHFHYLNQSKIYELDGVSNAEEYVKTRRAMDIVGIIHEDQEAIFRVLAAILHLGNIEFSPGKEHDSSVIKDEKSRFHMQMAANLFMCDVDLLLATLCTRSIQTREGIIVKALDCNAAVAGRDALAKTVYAHLFDWLVDKINRSVGQDINSQIQIGVLDIYGFECFKDNSFEQFCINFANEKLQQHFNEHVFKMEQEEYGNEEIIWSYIEFVDNLDVLDLIEKKPIGIIALLDEACMFPKSTHETFSTKLFQHFRSHPRLEKEKFSQTDFTISHYAGKVTYHTETFLDKNRDYIVVEHCNLFSSSKCPFVSGLFPLLPEDSSRSSYKFSSVASRFKQQLQALMETLKSTEPHYIRCVKPNSLNRPQIFENASIIHQLRCGGVLEAVRISLAGYPTRRTYSQFVDRFGLIAPDFMDGSYDDKVATEKILQKLKLENFQLGRTKVFLRAGQIGVLDSKRAEVLDNAAKCIQCRLRTFIAHRDFISVRAAAFSLQACCRGYVARKMYAAKRETAAAVSIQKYIRMWLTRHAYLKLYSSAIIIQSHVQGFTTRQKFLRGKEHKAATLFQACWRMSKVRSAFRLHQASIVTIQCLWRRRQAKRELRRLKQEANEAGALREAKNKLEKQLEQLTWRLHLEKKKRVSNEEAKQIEISKLQKMLEALNLELDAAKLATINECNKNAVLQNQLELSAKEKSALKRELAAVDEVRKENAALKVSLDSFEKKYVALELQLMNAQKGRDETIEKLRELEQKCSQLEQNVK 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4929g00001 1029 Gene3D - 663 730 - -
Gabi4929g00001 1029 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 4 53 IPR004009 GO:0003774|GO:0005524|GO:0016459
Gabi4929g00001 1029 SMART iq_5 754 776 IPR000048 GO:0005515
Gabi4929g00001 1029 SMART iq_5 850 872 IPR000048 GO:0005515
Gabi4929g00001 1029 SMART iq_5 779 801 IPR000048 GO:0005515
Gabi4929g00001 1029 SMART iq_5 827 849 IPR000048 GO:0005515
Gabi4929g00001 1029 SMART iq_5 802 824 IPR000048 GO:0005515
Gabi4929g00001 1029 SMART iq_5 731 753 IPR000048 GO:0005515
Gabi4929g00001 1029 FunFam Myosin heavy chain 249 303 - -
Gabi4929g00001 1029 Coils Coil 948 968 - -
Gabi4929g00001 1029 Pfam IQ calmodulin-binding motif 853 872 IPR000048 GO:0005515
Gabi4929g00001 1029 Pfam IQ calmodulin-binding motif 756 773 IPR000048 GO:0005515
Gabi4929g00001 1029 Pfam IQ calmodulin-binding motif 829 849 IPR000048 GO:0005515
Gabi4929g00001 1029 Pfam IQ calmodulin-binding motif 781 800 IPR000048 GO:0005515
Gabi4929g00001 1029 Gene3D - 829 879 - -
Gabi4929g00001 1029 Gene3D - 731 781 - -
Gabi4929g00001 1029 Gene3D - 782 828 - -
Gabi4929g00001 1029 PRINTS Myosin heavy chain signature 193 220 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi4929g00001 1029 PRINTS Myosin heavy chain signature 478 506 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi4929g00001 1029 PRINTS Myosin heavy chain signature 89 108 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi4929g00001 1029 PRINTS Myosin heavy chain signature 425 453 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi4929g00001 1029 PRINTS Myosin heavy chain signature 146 171 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi4929g00001 1029 Coils Coil 913 940 - -
Gabi4929g00001 1029 Gene3D Myosin VI head, motor domain, U50 subdomain 308 598 - -
Gabi4929g00001 1029 Coils Coil 864 908 - -
Gabi4929g00001 1029 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 828 883 IPR027417 -
Gabi4929g00001 1029 ProSiteProfiles IQ motif profile. 756 784 IPR000048 GO:0005515
Gabi4929g00001 1029 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 778 IPR027417 -
Gabi4929g00001 1029 ProSiteProfiles IQ motif profile. 803 832 IPR000048 GO:0005515
Gabi4929g00001 1029 Gene3D - 249 306 - -
Gabi4929g00001 1029 Gene3D Kinesin motor domain 62 659 IPR036961 -
Gabi4929g00001 1029 ProSiteProfiles IQ motif profile. 780 806 IPR000048 GO:0005515
Gabi4929g00001 1029 Coils Coil 972 1029 - -
Gabi4929g00001 1029 ProSiteProfiles IQ motif profile. 851 880 IPR000048 GO:0005515
Gabi4929g00001 1029 Pfam Myosin head (motor domain) 62 717 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi4929g00001 1029 PANTHER MYOSIN 51 801 - -
Gabi4929g00001 1029 Gene3D - 435 620 - -
Gabi4929g00001 1029 SMART MYSc_2a 53 730 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi4929g00001 1029 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 779 825 IPR027417 -
Gabi4929g00001 1029 ProSiteProfiles Myosin motor domain profile. 59 729 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi4929g00001 1029 CDD MYSc_Myo11 73 717 IPR036018 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4929g00001 Gabi-Chr4929 144 34398 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4929g00001 1 1029 Myosins gene family AT4G33200 73.567 0.0 1585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4929g00001 K10357 - gmx:100790815 1863.97