Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4925g00006 ATGCGTCCACCATTGAAGAGGGTCGATTTCTGCAGAGGAGACAAGGTTGAGGTTTGCAGCAAAGAAGAAGGGTTTCTTGGTTCCTATTACGAAGCCACCATTGTTTCCCACCTTGACAATGGCCTCTACGTTGTTCGCTACAAGAACCTTCTCGAGGACAACGAGTCTCTGCCTCTCACCGAAACCCTTTATCCCAAGGAGCTTCGTCCCGCGCCGCCTCGTGTCCACGCTTCTCAGTTTGCACTCTATCAGAAAGTCGATGCTTTCGACAACGATGGTTGGTGGGTTGGTTCGATCACCGGAAGAACTGGTTCTCACTACTACGTCTATTTTTCTACCACAAACGAAGAGATAGCGTACCCTTCTTCTCAGATCAGGGTTCATCAAGAATGGGTTAATGGGAATTGGATTTTGTCCAATTAA 423 0.4799 MRPPLKRVDFCRGDKVEVCSKEEGFLGSYYEATIVSHLDNGLYVVRYKNLLEDNESLPLTETLYPKELRPAPPRVHASQFALYQKVDAFDNDGWWVGSITGRTGSHYYVYFSTTNEEIAYPSSQIRVHQEWVNGNWILSN 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4925g00006 140 CDD Tudor_Agenet_AtDUF_rpt1_3 10 73 - -
Gabi4925g00006 140 CDD Tudor_Agenet_AtDUF_rpt2_4 84 127 - -
Gabi4925g00006 140 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 10 138 - -
Gabi4925g00006 140 SMART agenet_At_2 8 76 IPR014002 -
Gabi4925g00006 140 SMART agenet_At_2 78 133 IPR014002 -
Gabi4925g00006 140 Gene3D - 2 80 - -
Gabi4925g00006 140 Pfam Agenet domain 13 73 IPR008395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4925g00006 Gabi-Chr4925 92545 93267 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4925g00006 20 138 PHD Transcription Factor Family AT5G58610 28.188 8.52e-11 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4925g00006 - - gmx:106794115 221.861