Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4922g00002 ATGGGTCGGCACTCCTGTTGTTTAAAGCAAAAACTAAGGAAAGGTTTATGGTCTCCTGAAGAAGATGAGAAGCTTTTCAATTACATAACCAGGTTTGGTGTTGGCTGCTGGAGTTCTGTTCCCAAACATGCTGGGTTGCAAAGGTGTGGAAAGAGTTGCAGATTGAGATGGATAAACTATTTGAGGCCTGATTTGAAGAGAGGGATGTTCTCTCAACAGGAAGAGGATCTTATTATCAGTCTTCATGAAGTTCTTGGAAATAGGTGGGCTCAAATTGCAGCACAGTTACCAGGAAGAACAGATAATGAGATAAAAAACTTCTGGAATTCATGTTTGAAGAAAAAGCTAATGAAACAAGGGATTGATCCAACTACACACAAGCCCCTCCTCATTACTGAAGCTCATATAAAGGAAGAGAAGGAAAACACAGAAACACCACTATCTCAAGGGATTTTAGCTACATCGACAACATTAAACACCTCAAAGGGTTCACCAATTCTAATGAATGATTCGAATTACTATGATGCTGGGCTAACTGTAACAGAAGCTTCAAGAGAAGTTTTCATGAGCAAGCCAGCATTGGATCCCTTGTCCTACTTTGAATTCCAAATGGGCGTTGCTCATTCTGGTTATGATTCAAGTGTGAGTCATTATCAACCAAGTCTTGGACAATTTGATCAGAACCAGTTGGCAACAGATTCAAGCTATGGATTCTCTTCAATGCCAACTCTAAATAGTTATGAGCAGAGGAACGTGTCGGTGACAGAATTTTCTGATAACAATTCAGCTTCCAAAATCAGTTCTTTGTTCATGAATGATCAAATGAAAGAAAGTTCCAGCAATAGCTCAACCATGAGTAGTATTTATCCAGCAACAACAGGGTGTCAAATGAGCAGTGTGACGGAAAATGCAGGGTTCTCATGGGACGGTGAGAACAAGTTGGATCCTTTGTTACAGTTTCAAATCAATGCCATAAAATCTGAAGAGTTCAAGACAAGTTCAATGGATTTCACTACCTATCCGTTAACGTCACTGTCAGAAGATCTAACAGGAGCAAATTTTGATGTATTCCAGCATATATGA 1083 0.3961 MGRHSCCLKQKLRKGLWSPEEDEKLFNYITRFGVGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKQGIDPTTHKPLLITEAHIKEEKENTETPLSQGILATSTTLNTSKGSPILMNDSNYYDAGLTVTEASREVFMSKPALDPLSYFEFQMGVAHSGYDSSVSHYQPSLGQFDQNQLATDSSYGFSSMPTLNSYEQRNVSVTEFSDNNSASKISSLFMNDQMKESSSNSSTMSSIYPATTGCQMSSVTENAGFSWDGENKLDPLLQFQINAIKSEEFKTSSMDFTTYPLTSLSEDLTGANFDVFQHI 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4922g00002 360 FunFam Transcription factor MYB86 69 139 - -
Gabi4922g00002 360 FunFam Myb transcription factor 11 67 - -
Gabi4922g00002 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Gabi4922g00002 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Gabi4922g00002 360 CDD SANT 70 109 IPR001005 -
Gabi4922g00002 360 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Gabi4922g00002 360 Gene3D - 69 145 - -
Gabi4922g00002 360 CDD SANT 17 61 IPR001005 -
Gabi4922g00002 360 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi4922g00002 360 Gene3D - 11 67 - -
Gabi4922g00002 360 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi4922g00002 360 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gabi4922g00002 360 SMART sant 13 63 IPR001005 -
Gabi4922g00002 360 SMART sant 66 114 IPR001005 -
Gabi4922g00002 360 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi4922g00002 360 PANTHER MYB DOMAIN PROTEIN 55 1 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4922g00002 Gabi-Chr4922 30854 32195 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4922g00002 1 133 MYB Transcription Factor Family AT4G01680 84.211 3.51e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi4922g00002 Myb_DNA-binding 4.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4922g00002 K09422 - gmx:100811140 547.354