Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi491g00020 ATGAGTGTTAATGAAGGTTTCAGCATGGATGATGAGTATATGGATGACGAAGATCCACTTCCAGGGTTTCGCTTCCATCCCACCGATGAAGAACTTGTTAGTTTCTATCTTCGAAGGAAGCTTGACAAGAAACCCTTCAGTATTGAACTCATCAAACAGATTGATATCTACAAATACGATCCTTGGGATCTTCCAAAAGCTAGTGGTACTGGAGGAGAGAAGGAGGGGTACTTCTTTTGCAAAAGAGGGAGGAAGTATAGGAACAGCATAAGGCCTAATAGAGTGACTGGCTCTGGATTCTGGAAAGCAACTGGCATAGACAAACCAGTGTACTCACATGGAGGAGAAGGTGATGATTGCATTGGACTCAAGAAAACACTTGTATACTACCGTGGCAGTGCAGGCAAAGGCACCAAAACTGATTGGATGATGCACGAGTTTCGCCTTCCCTCCAATTCTGACACCAACATAAACTTTGCCAATGCCAAGAACAATGCAGATATTCCCCAAGAAGCTGAAATTTGGACATTGTGCAGAATTTTCAAAAGAAATGTTTCACAAAGAAAACATATACCAGACTTGAAACAAATAGCTGCTAAGCGTCATTCAATGCATGATAAAAACACCATAATGAGCAGTGTGGAGTTTAACACTAATCAAGAAGGATATATCAATTTTGGTGGCCATTATCACAATCAGAAAACAGTTATTAACTACACAAGCAGTGATCAATGGAATCAGTTTCATGTAGGTGATCAGTTGAGTTCTCCAGTGGAACAGCAACCTCAACAAACTGCACCAGCTTCTAACTTCTGGATTAACCAGGCTATGAACGATTTCTACACTTTTGATAACTGGGATGAGCTTGGATCAGTTGTGAAGTTTGCTGTTGATTCGTCTAGCTTTCAAATAAGCATGTAA 921 0.4061 MSVNEGFSMDDEYMDDEDPLPGFRFHPTDEELVSFYLRRKLDKKPFSIELIKQIDIYKYDPWDLPKASGTGGEKEGYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSHGGEGDDCIGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSNSDTNINFANAKNNADIPQEAEIWTLCRIFKRNVSQRKHIPDLKQIAAKRHSMHDKNTIMSSVEFNTNQEGYINFGGHYHNQKTVINYTSSDQWNQFHVGDQLSSPVEQQPQQTAPASNFWINQAMNDFYTFDNWDELGSVVKFAVDSSSFQISM 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi491g00020 306 Pfam No apical meristem (NAM) protein 21 149 IPR003441 GO:0003677|GO:0006355
Gabi491g00020 306 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 18 259 - -
Gabi491g00020 306 Gene3D NAC domain 28 187 IPR036093 GO:0003677|GO:0006355
Gabi491g00020 306 ProSiteProfiles NAC domain profile. 19 183 IPR003441 GO:0003677|GO:0006355
Gabi491g00020 306 FunFam NAC domain-containing protein 35 28 186 - -
Gabi491g00020 306 SUPERFAMILY NAC domain 11 183 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi491g00020 Gabi-Chr491 125588 127921 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi491g00020 9 192 NAC Transcription Factor Family AT5G39820 57.921 1.58e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi491g00020 NAM 3.4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi491g00020 - - gmx:100790471 498.049