Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi491g00019 ATGGATGAGATAGCCAGGAAGAAAAGTTCTGCGATTGACAGAAGCAACTGGGAGAGTAGTTTTGAGCTGGAGGCAACTGAAGGAAATAAAAAGAAGAACAAGGAAAGAAAGAGAAAGCATGCTACTCATAAAATACTCAAATTGAATGAAACTCCTGTGGAAAATTGTACTGGTGAAGCAGCTGACAAACAAACTTGCTCTGTTGAAGGGAACAACATTCCATTCATGTGGAATAGGGAAGAAGAGATCCAAATCCATAAGAGGAAGAAGAAAAAGGGGAGAAAAGATATTGAAGTGATGAATAGTAACATTGCTGATGATGAAGAAATGCAGCTCTTGGATGACAACCAACAAAGCAAGATGAAGAAAAGAAAAAATTATGAAGATTCATTTACTGGAACACAAGAAATGGGTTATTCGAAACCAAGCAAAAAAGGCAAAATGACAGAGTGTAATGAGATAAAAAACAATGGAGGTGATCCTCCTTTGGATAGAGTCAGCACAGGAAATGCTAATGCACATTCTCTTGTCGCTGAAGTTGATTGTGGAGGAAAGAAGATGGAGAAGAAGAAGAAGAAGAAACTGAGCAACAAAAGTAAAAGCACAGTAAGAGACTGTAAAGGCAATGAAGGTGATCATTCTGTTGTAACTGGAGAGGGGCAAGACAAGAAGACGAAGATGGAGAAGATACTGAGCAAGAAAATCAAAAGAAATCAAGATGAAGAGTATACAACCAATGGAGGCGAGCCGCGTTTGGCTGAAAGCAATATAGTTGATCTACCTTTAGTCAAAACGAATGAAGGTGAAAATGATGACCAAGGCAAGAAGCTGAAGAAGAAGAAGAAGCTGAATGAAGAAAGCAAACGTAAGGAATATGACGAGTTTGCAAGCAACGAAGGTGAAGATGATGACCAAGGCAAGAAGATGAAGAAGAAGAAGAAGAAACTTAGCGACAAAAGCAAAAGTAAGGCAAACAGTGAGTTTAAAACCAATGAAGGTGATCTATCTTTGGCTGGAGGAGATGCTAATGTACATTGCAATGTCACTGAAGTTGATGATCAAGGCAAGAAGATGAAGAAAAAGAAGAAAACCAAGGCAGGTACTGGGGAATCTCCTAACCCTGCACCTGGTGGAACATCCAAACCCAAACGAGTAACTTTTTCTGACCAAGTGGAGGTTTGTTGTGATGGCTTAGTGCGTGGGAAAAGGTTTACAAAAGAAGAAGATGAGAAGATTAAAGAGGCTGTTTTTGACTATATAGAGTCTCATGGTTTGGGAGATGAAGGTCTAGATATGATTCTCCATTGCAGATCTCATCCTGAGATTAGAGATTGTTGGAAGGAAATTGGAGCAGCCTTTCCTGAGAGGCCTTACCTTAGCGTGTATTATCGTGCTCATATTTTGTTTGAAAGAGATGAGAAACGTAAGTGGACACCTGAAGAGCTTGAATTTATACGAAAGGTCCAGGAACAACATGGATCAGATTGGAAATCGATAGCTGAAGCATTGGGTAAAAACCGATTTCATGTAAAGGATGCATGGCGTAGAATAAAATTAACCAATACAAACAAAGGACGATGGTCCCAAGAGGAGTATCAAAATTTATTTGATTTAGTAAACCTGGATTTACGCGCAAGGGCTTTAGAGGATTGTAGAAAATCAAAACATGGTATGTTGCGAGATAATATTAGTTGGGAGGCAATTGGCAACATGTTCTCCTCTAGAACCAGCCAACGCTGCTGCAAAAAGTGGTATGAGCAATTAACATCACCTATGGTTGCTAATGGTGTATGGAGTGATACTGATGACTACCGCCTGATAAATGCTTTATTTACTTTGGATGCTTGCTGCATGGAGGACGTAGACTGGGACAATTTGCTTGAACATAGATCTGGGGATGTGTGTAGAAAACGATGGAACCAAATGGTCCAATATATTGGAGAGCATGGGAGGAAATCATTTGCTGAACAGGTGGAAATCCTTGTGAAGAGATTTTGTCCCGATTTATTGGAAGCAAGAGAAGCCTTTGATAACAAACCTGTAGTTTGTTGA 2052 0.3972 MDEIARKKSSAIDRSNWESSFELEATEGNKKKNKERKRKHATHKILKLNETPVENCTGEAADKQTCSVEGNNIPFMWNREEEIQIHKRKKKKGRKDIEVMNSNIADDEEMQLLDDNQQSKMKKRKNYEDSFTGTQEMGYSKPSKKGKMTECNEIKNNGGDPPLDRVSTGNANAHSLVAEVDCGGKKMEKKKKKKLSNKSKSTVRDCKGNEGDHSVVTGEGQDKKTKMEKILSKKIKRNQDEEYTTNGGEPRLAESNIVDLPLVKTNEGENDDQGKKLKKKKKLNEESKRKEYDEFASNEGEDDDQGKKMKKKKKKLSDKSKSKANSEFKTNEGDLSLAGGDANVHCNVTEVDDQGKKMKKKKKTKAGTGESPNPAPGGTSKPKRVTFSDQVEVCCDGLVRGKRFTKEEDEKIKEAVFDYIESHGLGDEGLDMILHCRSHPEIRDCWKEIGAAFPERPYLSVYYRAHILFERDEKRKWTPEELEFIRKVQEQHGSDWKSIAEALGKNRFHVKDAWRRIKLTNTNKGRWSQEEYQNLFDLVNLDLRARALEDCRKSKHGMLRDNISWEAIGNMFSSRTSQRCCKKWYEQLTSPMVANGVWSDTDDYRLINALFTLDACCMEDVDWDNLLEHRSGDVCRKRWNQMVQYIGEHGRKSFAEQVEILVKRFCPDLLEAREAFDNKPVVC 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi491g00019 683 ProSiteProfiles Myb-like domain profile. 469 518 IPR001005 -
Gabi491g00019 683 SUPERFAMILY Homeodomain-like 474 535 IPR009057 -
Gabi491g00019 683 Pfam Myb-like DNA-binding domain 477 535 - -
Gabi491g00019 683 SMART sant 473 520 IPR001005 -
Gabi491g00019 683 SMART sant 400 471 IPR001005 -
Gabi491g00019 683 SMART sant 594 645 IPR001005 -
Gabi491g00019 683 SMART sant 523 590 IPR001005 -
Gabi491g00019 683 SUPERFAMILY Homeodomain-like 568 646 IPR009057 -
Gabi491g00019 683 Gene3D - 478 516 - -
Gabi491g00019 683 ProSiteProfiles Myb-like domain profile. 519 588 IPR001005 -
Gabi491g00019 683 CDD SANT 476 518 IPR001005 -
Gabi491g00019 683 MobiDBLite consensus disorder prediction 199 244 - -
Gabi491g00019 683 MobiDBLite consensus disorder prediction 265 309 - -
Gabi491g00019 683 Coils Coil 31 51 - -
Gabi491g00019 683 PANTHER GB|AAC33480.1 26 682 - -
Gabi491g00019 683 ProSiteProfiles Myb-like domain profile. 590 643 IPR001005 -
Gabi491g00019 683 MobiDBLite consensus disorder prediction 183 384 - -
Gabi491g00019 683 Gene3D - 517 592 - -
Gabi491g00019 683 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 474 522 IPR017930 -
Gabi491g00019 683 MobiDBLite consensus disorder prediction 117 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi491g00019 Gabi-Chr491 113950 118189 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi491g00019 471 609 MYB Transcription Factor Family AT4G32730 29.577 1.90e-08 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi491g00019 Myb_DNA-bind_6 1.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi491g00019 - - gsj:114382741 681.789