Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4914g00118 ATGGGGTGTGTGATTAGCCGAGAAGTGTCATCAGGAGTAGTCTCTGAGGTGAAGGAGGAAAAGAGTTTGAAGGTTGAGTCCAACAAGAAGGTTGATGAAGTGTCCACGAGCAGAGCTGAGGGGAGTATAGGAGAGGTTCAGAATGGTGAGAAGGAGAAGGAGAAGGATAAGGAGAAGGAAGAGAAGGGTGGTGATGATGGGGTTCAGCGGCCAAGGGGTGAAAGAAGAAGATCAAAGCCAAACCCAAGGCTAAGTAATCCACCTAAGCATTTGCAGGGGGAGCAAGTAGCAGCTGGGTGGCCACCTTGGCTTACAACAGTGTGTGGGGAAGCACTTAGTGGGTGGATTCCGCGAAAGGCTGATACATTTGAGAAAATTGATAAGATCGGTCAAGGAACATATAGTAATGTGTACAAAGCTAAAGACATGTTGACGGGTAAGATTGTTGCACTGAAGAAGGTTCGATTTGACAATTTGGAACCTGAAAGCGTAAAATTCATGGCTAGAGAGATTCTTATTTTGCGAAGATTGGATCATCCCAATGTTATAAAGCTAGAAGGTTTAGTTACATCTAGAATGTCCTGGAGTTTGTATCTGGTGTTTGAATACATGGTGCATGATTTAGCTGGACTTGCTGCAAGCCCAGACATCAAGTTCACAGAACCTCAGGTCAAATGTTACATGCATCAACTGCTATCAGGACTTGAGCACTGTCATAATCAACATGTACTTCACCGTGATATTAAAGGATCGAATCTTCTTATTGACAACGAAGGAATACTTAAAATTGCTGACTTTGGACTTGCATCTTTCTTTGATCCAAACCACAGGCATCCCCTGACTAATCGAGTAGTTACCCTTTGGTACCGGCCTCTTGAGTTGCTTCTTGGTGCCACAGATTATGGTGTGGGTGTTGACCTTTGGAGTGCTGGTTGCATTTTAGGAGAGTTATTGGCTGGGAAACCAATTATGCCTGGCCGTACAGAGGTGGAACAACTGCATAAGATATACAAACTTTGTGGTTCGCCTTCTGATGAGTATTGGAAGAAGTCAAAGTTGCCAAATGCTACCTTGTTTAAACCTCGAGAGCCATACAAGAGATGCATAAGAGAGACATTTAAAGATTTTCCACCTTCTGCGCTGCCCCTTCTTGATACTCTTCTTGCAATTGATCCAGCAGAACGGAAGAATGCCTCAGATGCTCTTAAAAGTGAGTTCTTTACCACAGAACCTTATGCTTGTGATCCTTCTAGCCTTCCAAAATATCCTCCAACCAAGGAAATCGATGTTAAACGACGGGATGATGAAGCAAGGAGATCAAGAGCTCCAGGCAAAGCTCATGTTGATGGTGCGAAGAAGCATCGAACACGTGATCGTGCTGTAAAAGCTGCTCCTGAAGCCAATGCTGAGCTTCAATACAATATTGATAGAAGGCGTCTAATCAGTCATGCAAATGCCAAGAGCAAGAGTGAAAAGTTCCCTCCCCCGCATGAAGATGGACAACTTGGCTTTCCTTTGGGATCTTCAAATCATATTGATCCAGATATTGTTCCTCATGATGTCTCTTTGGGTTCAACCTCATATATCTATTCAAAGGAACCATTCCAAGCTTGGTCAGGTCCCATTGGTGATTCTGCTAGCATTGGTGTCCCAAAACGGAAGAAACACACTGCAGGTGATGCATTGGATTTATCAAAACCATATAAAGGTGCCCTCAAGGATAAGGGTAAAGGAAAGAAAATCATAGTTTAG 1752 0.4361 MGCVISREVSSGVVSEVKEEKSLKVESNKKVDEVSTSRAEGSIGEVQNGEKEKEKDKEKEEKGGDDGVQRPRGERRRSKPNPRLSNPPKHLQGEQVAAGWPPWLTTVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDMLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSWSLYLVFEYMVHDLAGLAASPDIKFTEPQVKCYMHQLLSGLEHCHNQHVLHRDIKGSNLLIDNEGILKIADFGLASFFDPNHRHPLTNRVVTLWYRPLELLLGATDYGVGVDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYKRCIRETFKDFPPSALPLLDTLLAIDPAERKNASDALKSEFFTTEPYACDPSSLPKYPPTKEIDVKRRDDEARRSRAPGKAHVDGAKKHRTRDRAVKAAPEANAELQYNIDRRRLISHANAKSKSEKFPPPHEDGQLGFPLGSSNHIDPDIVPHDVSLGSTSYIYSKEPFQAWSGPIGDSASIGVPKRKKHTAGDALDLSKPYKGALKDKGKGKKIIV 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4914g00118 583 FunFam probable serine/threonine-protein kinase At1g54610 110 205 - -
Gabi4914g00118 583 SMART serkin_6 123 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4914g00118 583 FunFam probable serine/threonine-protein kinase At1g54610 206 447 - -
Gabi4914g00118 583 SUPERFAMILY Protein kinase-like (PK-like) 118 414 IPR011009 -
Gabi4914g00118 583 Gene3D Phosphorylase Kinase; domain 1 110 205 - -
Gabi4914g00118 583 MobiDBLite consensus disorder prediction 1 96 - -
Gabi4914g00118 583 MobiDBLite consensus disorder prediction 425 464 - -
Gabi4914g00118 583 MobiDBLite consensus disorder prediction 13 36 - -
Gabi4914g00118 583 PANTHER CELL DIVISION PROTEIN KINASE 121 411 - -
Gabi4914g00118 583 MobiDBLite consensus disorder prediction 415 464 - -
Gabi4914g00118 583 MobiDBLite consensus disorder prediction 45 81 - -
Gabi4914g00118 583 CDD STKc_CDK9_like 123 407 - -
Gabi4914g00118 583 ProSitePatterns Serine/Threonine protein kinases active-site signature. 243 255 IPR008271 GO:0004672|GO:0006468
Gabi4914g00118 583 ProSitePatterns Protein kinases ATP-binding region signature. 129 152 IPR017441 GO:0005524
Gabi4914g00118 583 ProSiteProfiles Protein kinase domain profile. 123 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4914g00118 583 Gene3D Transferase(Phosphotransferase) domain 1 206 446 - -
Gabi4914g00118 583 Pfam Protein kinase domain 123 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4914g00118 Gabi-Chr4914 1107153 1113563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4914g00118 115 445 Core Cell Cycle Gene Families AT5G10270 53.026 5.41e-120 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gabi4914g00118 Pkinase 9.9e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4914g00118 K08819 - gmx:100817289 991.49