Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4914g00105 ATGGCGAATGAAGGTGACCCTAACCAGCTAGGTTATTGTTTATGGGACCATAAGAAAAGCTCTGCTGACAAATCAAAGAAGGTCCCAATGGTCGATGCTTTTAATCTTAAACCCATGAGACGATTATTTTCTTGCTCTGCTTCTGCCCAAGACTTGAGACATTTGGACTTGGAGAAAGAGAAAGAAGATGATGCATCTCCAAGAGGAGTCTTAGAAGCCTGCGTTAGAGACTTTGACTCTCAGCTGCAACCTGAATTGGAGACCAGTTGTTCAAATTCCAGGGCTCGGTCTCACTGGAGCAAAATTTTCAAACTGTGGAAAAAAAAACCACTTAAGCGCCTAACGTCCATCCCCCCAATTGGTGTGCCAAAGTTACCAAAGTGGAAAAGCAAAAGCACTAGAGAAAATACTGTTCTACGTAATCTTGACAACTTGAGGTCTTCTTTGGTGACCTTCAGCCTCTCTGACCTGAGAAATGCAACCGACAATTTTAGCAATGAAAATTTAATTGGAAGAGGTGGTTTTGCTGAGGTTTACCAGGGTATTCTCCAAGATGGGCAACTAATAGCTGTGAAGAAACTGACTAAAGGAACCACTGATGAGAAGACAGCTGGCTTTCTAACTGAGCTAGGTGTTATTGCTCATGTTGACCATCCTAATACTGCCAAGCTTATTGGATGTTGTGTAGAAAGGGAAATGCAGCTTGTCTTTCAGCTATCTCCACTGGGAAGTTTAGGATCTCTTCTTCATGGTCCAGATAAAAACAAATTAGATTGGAGTAAAAGGTATAAAATTGCTCTGGGAATAGCTGAAGGTCTCCTTTATCTGCATGAGAATTGTCACAGACGAATAATTCATAGAGATATTAAGGCAGAGAATATTCTGCTCACCGAGAATTTTGAGCCTCAGATTTGTGATTTTGGGCTTGCAAAGTGGTTACCAGAACAATGGACTCACCATAATGTATCAAAATTTGAAGGCACATTTGGGTATTTTGCTCCTGAATATTGCATGCATGGCATAGTAGACGAGAAAACTGATGTTTATTCTTTTGGGGTCCTACTTTTGGAGATCATAACTGGGCGTAAGGCTTTGGATCATTTGCAGAAGAGTGTTGTCATATGGGCAAAACCTTTGCTTGAAGCTAATCATATCAAGGACCTCATTGATCCTTCTCTTGAGGATAATTATGACCGAGAACAGATGGGTCGTGTTGTTTTGACTGCATCAATGTGTGTTGAGCAGTCTCCTCTAATACGGCCCCGCATGAGTCAGGTTGTAACACTGCTAAGAGGAGATGACTGTATCCTGGAATCTGCAAAAGCACGCCGAAAGAAGCCTCTCCTAAGAACATACTCAGAAGAGCTACTGGATGCGCAAGAATACAACTCAACAAAATATCTAAGAGATCTCAAACGACATAGGCAGATTATTGGTTTGGAACTTGGAAGTCCATGGAAATGA 1464 0.416 MANEGDPNQLGYCLWDHKKSSADKSKKVPMVDAFNLKPMRRLFSCSASAQDLRHLDLEKEKEDDASPRGVLEACVRDFDSQLQPELETSCSNSRARSHWSKIFKLWKKKPLKRLTSIPPIGVPKLPKWKSKSTRENTVLRNLDNLRSSLVTFSLSDLRNATDNFSNENLIGRGGFAEVYQGILQDGQLIAVKKLTKGTTDEKTAGFLTELGVIAHVDHPNTAKLIGCCVEREMQLVFQLSPLGSLGSLLHGPDKNKLDWSKRYKIALGIAEGLLYLHENCHRRIIHRDIKAENILLTENFEPQICDFGLAKWLPEQWTHHNVSKFEGTFGYFAPEYCMHGIVDEKTDVYSFGVLLLEIITGRKALDHLQKSVVIWAKPLLEANHIKDLIDPSLEDNYDREQMGRVVLTASMCVEQSPLIRPRMSQVVTLLRGDDCILESAKARRKKPLLRTYSEELLDAQEYNSTKYLRDLKRHRQIIGLELGSPWK 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4914g00105 487 Pfam Protein tyrosine and serine/threonine kinase 167 428 IPR001245 GO:0004672|GO:0006468
Gabi4914g00105 487 SMART serkin_6 164 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4914g00105 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 284 296 IPR008271 GO:0004672|GO:0006468
Gabi4914g00105 487 ProSitePatterns Protein kinases ATP-binding region signature. 170 193 IPR017441 GO:0005524
Gabi4914g00105 487 PANTHER OS08G0249100 PROTEIN 50 474 IPR046958 -
Gabi4914g00105 487 Gene3D Transferase(Phosphotransferase) domain 1 241 446 - -
Gabi4914g00105 487 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 241 444 - -
Gabi4914g00105 487 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 140 239 - -
Gabi4914g00105 487 ProSiteProfiles Protein kinase domain profile. 164 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4914g00105 487 SUPERFAMILY Protein kinase-like (PK-like) 152 458 IPR011009 -
Gabi4914g00105 487 Gene3D Phosphorylase Kinase; domain 1 126 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4914g00105 Gabi-Chr4914 992585 1003072 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4914g00105 128 484 Receptor kinase-like Gene Family AT1G53420 38.649 3.70e-74 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gabi4914g00105 PK_Tyr_Ser-Thr 2.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4914g00105 - - cam:101512181 752.666