Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4914g00092 ATGGCACTAGAAGCAGTGGTATATCCACAAACACAAGACCACCCATTTGGTTATGGAGTGAAAGACTTGTACAACTGCAACTGGGGTTATGAAGACCACCTCAACCTTGAAAAAGAAGAAGAACAAGGTTCTATCAGTTTTCTTGAGAACCAAACAGGGAATTATCCTTATGGAGATTTGAATAGTTCATCATCCACTACTTCAATGTTACCCCATTTGAATGAACTTCAAGAAACCACTGACCCCAACAACAACAACAACAACAATACAGAAAACTTAGATATCTCAACCTTCATCCAAGCTCGTCCCAAGAGGCGCAGAGCCAAAAGCAGAAAGAACAAGGAAGAAATTGAGAACCAGAGAATGACTCACATTGCTGTTGAGAGAAATCGAAGGAAGCAGATGAATGAGTATCTTTCTGTACTTCGTTCTCTAATGCCTGACTCTTATATCCAAAGGGGTGATCAAGCTTCTATAATTGGAGGTGCTATTAACTTTGTTAAGGAGCTTGAGCAGAGGCTGCAACTTCTTGGTTCTCAGAAAGCAACAGTAGGGAAATCTGATGATGATGATGATGCAAATATGATGATGCCCTTTTCTGAGTTCTTCACTTTTCCCCAGTATTCAACAAGTGCTAGTGGCTGCGATAATTCTGCAGCCATAGGTGAGCACGTGGGTGAGGTTCAGTCTAGTATTGCTGACATAGAAGTGACAATGGTGGAAAGCCATGCAAACCTTAAAATAAGATCCAAGAAGCGGCCAAAGCAGCTCTTGAAGATGGTGTCTGGTTTGCATAGCATGCGCCTCACGATCTTGCACTTAAATGTTACTACCACTGGTGGAATTGTCCTCTACTCTCTCAGTGTTAAGGTAGAAGATGATTGCAAATTGGGATCGGTGGATGATATAGCTGCAGCTGTGTACCAGATGCTGGATAGGATTCAACAAGAGGCAATGTTGAATTAG 966 0.4203 MALEAVVYPQTQDHPFGYGVKDLYNCNWGYEDHLNLEKEEEQGSISFLENQTGNYPYGDLNSSSSTTSMLPHLNELQETTDPNNNNNNNTENLDISTFIQARPKRRRAKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIIGGAINFVKELEQRLQLLGSQKATVGKSDDDDDANMMMPFSEFFTFPQYSTSASGCDNSAAIGEHVGEVQSSIADIEVTMVESHANLKIRSKKRPKQLLKMVSGLHSMRLTILHLNVTTTGGIVLYSLSVKVEDDCKLGSVDDIAAAVYQMLDRIQQEAMLN 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4914g00092 321 SMART finulus 125 176 IPR011598 GO:0046983
Gabi4914g00092 321 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 119 170 IPR011598 GO:0046983
Gabi4914g00092 321 Gene3D - 104 185 IPR036638 GO:0046983
Gabi4914g00092 321 Pfam Helix-loop-helix DNA-binding domain 120 171 IPR011598 GO:0046983
Gabi4914g00092 321 PANTHER MAX DIMERIZATION, MAD 58 318 - -
Gabi4914g00092 321 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 119 182 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4914g00092 Gabi-Chr4914 895451 896664 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4914g00092 1 291 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 48.026 2.03e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi4914g00092 HLH 7.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4914g00092 - - pvu:PHAVU_007G181900g 438.343