Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4914g00080 ATGGATCATCAAGGGCATGGCCAGAACCCTTCTATGGGGGTTGTGGGTGGTGGACCACAATTGAATTATGGTTCTAATCCATACCAGCCCAACCATTTAACTGGGTCACCTGGGATGGTTGTTACATCTGTTGGGACCATTCAATCCACAGGTCAACCAGCTGGAACTCAGCTAGGACAACATCAACTTGCTTATCAGCATATTCATCAGCAACAACAGCAGCAACTTCAGCAACTTCAGCAACAGCTCCAAGCCTTTTGGGCCAACCAATATCAAGAAATTGAGAAGGTAATTGATTTCAAGAACCACAGCCTTCCCTTGGCGAGGATCAAGAAGATTATGAAGGCTGATGAGGATGTTAGAATGATATCAGCTGAGGCACCGGTCATATTTGCAAGGGCATGTGAAATGTTCATTTTAGAGTTAACCTTGCGTTCTTGGAATCACACTGAAGAGAACAAAAGGAGGACACTTCAGAAGAATGATATTGCAGGAGCCATAACAAGAACTGATATCTTTGATTTCTTGGTTGACATTGTGCCTAGGGAGGACTTGAAAGATGAAGTGCTTGCATCAATACCAAGAGAAACAATGCCTGTTGCAGGGCCTGCTGATGCACTTCCTTATTGCTATATGCCACCTCAACCTGGACAGCACGTTGGAACTGCCGGTGTCATAATGGGTAAGCCTATGATGGACCCTAATATGTATGCTCAGCAGTCTCATCCCTACATGGCACCACAAATGTGGCCACAACCACCAGAGCAACAACAATCCTCTCCTGATCATTAG 792 0.452 MDHQGHGQNPSMGVVGGGPQLNYGSNPYQPNHLTGSPGMVVTSVGTIQSTGQPAGTQLGQHQLAYQHIHQQQQQQLQQLQQQLQAFWANQYQEIEKVIDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAGAITRTDIFDFLVDIVPREDLKDEVLASIPRETMPVAGPADALPYCYMPPQPGQHVGTAGVIMGKPMMDPNMYAQQSHPYMAPQMWPQPPEQQQSSPDH 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4914g00080 263 SUPERFAMILY Histone-fold 68 176 IPR009072 GO:0046982
Gabi4914g00080 263 MobiDBLite consensus disorder prediction 1 20 - -
Gabi4914g00080 263 FunFam Nuclear transcription factor Y subunit gamma 67 182 - -
Gabi4914g00080 263 Gene3D Histone, subunit A 64 182 IPR009072 GO:0046982
Gabi4914g00080 263 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 73 205 - -
Gabi4914g00080 263 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 104 166 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4914g00080 Gabi-Chr4914 787786 789807 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4914g00080 1 250 CCAAT-HAP5 Transcription Factor Family AT1G08970 60.800 2.08e-85 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Gabi4914g00080 CBFD_NFYB_HMF 1.2e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4914g00080 K08066 - gmx:100527803 394.045