Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4914g00048 ATGAGTTGTGGCTGCTTTGGAGCCTCAACTCTCAAGAAGAAAAGGAGTCCGAGTCCTTCTGATACTCCAAATGAAATTGATGGCTATCCACTTGATAATATAATGCATTTCTCTGATAAAGAACTGAGATTGGCCACTGATGATTATCATCCAAGCAAAAAGATAGGGCGAGGAGGTTTTGGAACTGTTTACCAGGGAACCTTAAAAGATGGAAGACAGGTAGCAGTGAAGACCCTTTCAGTTGGGTCAAGGCAGGGAGTTCGTGAGTTTTTAACTGAAATTAAAACTATATACAATGTTAAGCATCCAAACCTTGTTGAATTGATTGGTTGCTGCGTTCAAGGACTTAATCGTGTATTAGTTTACGAGTATGTGGAAAATAACAGCCTTGATCGTGCTTTACTTGGCACAAGAAATACAAACATTAAACTAGACTGGAGAAAAAGATCTGCTATTTGCACGGGTACCGCTCGGGGTCTTGCATTTCTTCACGAGGAACTTGTGCCACATATTGTGCACAGGGACATCAAGGCCAGTAACATACTACTTGACAGAGACTTTAATCCAAAAATAGGAGATTTTGGGTTGGCTAAATTATTTCCAGATGACATCACTCACATTAGCACAAGAATCGCTGGAACAACTGGTTACTTAGCACCAGAATATGCAATGGGTGGCCAGTTAACCATGAAGGCTGATGTATACAGTTTTGGGGTTCTTATACTTGAAATAATTAGCAGCAAAAGCAGTTCAAGGGCAAACTGGGGAGGGTCAAACAAATTTCTCTTGGAATGGGCCTGGCAACTTCATGAAGAGGGGAAACTGTTGGAGCTTGTGGATCCAAACATGGGTGAATTTCCCGAGGAGGAGGTAATTAGGTACATGAAGGTAGCTTTTTTCTGCACACAGGCAGCAGGAAGCAGAAGGCCACTGATGTCCCAAGTTGTTGACATGCTCTCCAAGAAAATAAGGCTCAATGAAAAGCAACTTACAGCACCAGGGTTCTTCCAGGACTCAGGAGAATCCTCTCTAAAGAAATCATCCTTTGAGTCCACTAGTTATCAATTTAGCTCTACCCCTGTCAGTATTACTCAGGTTACCCCACGGTGA 1110 0.4234 MSCGCFGASTLKKKRSPSPSDTPNEIDGYPLDNIMHFSDKELRLATDDYHPSKKIGRGGFGTVYQGTLKDGRQVAVKTLSVGSRQGVREFLTEIKTIYNVKHPNLVELIGCCVQGLNRVLVYEYVENNSLDRALLGTRNTNIKLDWRKRSAICTGTARGLAFLHEELVPHIVHRDIKASNILLDRDFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYAMGGQLTMKADVYSFGVLILEIISSKSSSRANWGGSNKFLLEWAWQLHEEGKLLELVDPNMGEFPEEEVIRYMKVAFFCTQAAGSRRPLMSQVVDMLSKKIRLNEKQLTAPGFFQDSGESSLKKSSFESTSYQFSSTPVSITQVTPR 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4914g00048 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Gabi4914g00048 369 ProSitePatterns Protein kinases ATP-binding region signature. 55 77 IPR017441 GO:0005524
Gabi4914g00048 369 MobiDBLite consensus disorder prediction 350 369 - -
Gabi4914g00048 369 SUPERFAMILY Protein kinase-like (PK-like) 32 354 IPR011009 -
Gabi4914g00048 369 ProSiteProfiles Protein kinase domain profile. 49 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4914g00048 369 FunFam Putative LRR receptor-like serine/threonine-protein kinase 125 331 - -
Gabi4914g00048 369 Gene3D Phosphorylase Kinase; domain 1 22 124 - -
Gabi4914g00048 369 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 33 351 - -
Gabi4914g00048 369 Pfam Protein kinase domain 49 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4914g00048 369 CDD STKc_IRAK 55 321 - -
Gabi4914g00048 369 SMART serkin_6 49 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4914g00048 369 FunFam cold-responsive protein kinase 1 20 124 - -
Gabi4914g00048 369 Gene3D Transferase(Phosphotransferase) domain 1 125 334 - -
Gabi4914g00048 369 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4914g00048 Gabi-Chr4914 579253 586045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4914g00048 10 368 Receptor kinase-like Gene Family AT1G56120 48.889 1.82e-109 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi4914g00048 Pkinase 1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4914g00048 - - gmx:100775344 634.795