Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4914g00011 ATGGACATGCGTGGAAATGATGATCGTTCCCCAAAGGAATCGGGAGGCTCAAATCATATCACTGGAAAAAATAAACTGCTTTCAGGAGAGGCAGGTGATACTCCAGATTCCAAGAAACCAAAGCTCCCAAATGATTCAAAGGAGGAAGAAAGACCTTCGATCCATCCATTGTCAGAGATGGAGCAGCCTAAAGGAGTCGACACATTACCTGAATTAGTGGGCAGTAGTCATCCTTCTCGGGATGTTAGCAACCAGGTCTCGAGGCAACTATTTGGGCCCGCTGAATTAGGTATCCGTATGCTTGACGAAACGTCAACAAATTTTCTGCAACCGTCACCGTCGTTGATAACACAAATTGTGCAAAAATTCCTTGTTGAATTAGACGCAGGTGAGTTTTTGTTCGAAGAAGTTACTCGCCATCATCAATCAAGCATAAGCGAGAATTTTTTGTCCTGCCATTTTTCAGCGGACGGAAGATTTTTGGCATGTGCTGGACATGGGAAGAAGGTTACAATTTGGAACAAGGAAGATTCTAATTTTGCCATTACAGAAAAATCACATTCAGATGTGATCACAGAAGTTCGATTTCGTCCAAATCACCGGTCAACTATGTATGCTACATCTTCCTATGATCGAACTGTAAAAACATGGGATGCAGCCTATCCGGACATTGAATATGCCACTCTTAATGCGGATTTTGGCTATCCAATATTGTCATTGGATTTCCACCCGAGAGATCGTGACTATCTTTGCTGCTGCGATGCTAATGATTTAATTCAGCTGTGGAATGTATATCACAATGCTTACATGAAGAGCTTTAAGGGAGGTACTCAACAAGTTAGATACCAGCCTCGATTTGGGAAGCTTTTAGCTGCAGCTTCAGGAAAGTTTATCAATATATTTGAAACAGAGAATTACAAAATCCGGAACAAACTAGAGGGACATAACAAAGAAGTTATTTCCATTTGCTGGGATCAAACTGGAAACTACATTGCCTCAGTTAGTGAAGATGAGGCACACTTCTGGTCCGCTGCCCCACAAGGAGGTTTACTACATGTTTTGGCTTGCAAACACGGGAAATTTGAGTCGTGCATTTTTCATCCTAAATATCCTAACCTCGTAATTATTGCTGGCCATAAGTGCCTGGAATTTTGGATTCCTCAGAGAGAGCATTCATTGAACTTTTTTGATGGTGGTGATGGGATATTTACTGGACTAGCAACTTCACCCCAAAATCAAAGGGTTGCCTCAATTAGCCGTGATCGCGTGAAACTTTGGAAAATAAGTTCCTAG 1293 0.4184 MDMRGNDDRSPKESGGSNHITGKNKLLSGEAGDTPDSKKPKLPNDSKEEERPSIHPLSEMEQPKGVDTLPELVGSSHPSRDVSNQVSRQLFGPAELGIRMLDETSTNFLQPSPSLITQIVQKFLVELDAGEFLFEEVTRHHQSSISENFLSCHFSADGRFLACAGHGKKVTIWNKEDSNFAITEKSHSDVITEVRFRPNHRSTMYATSSYDRTVKTWDAAYPDIEYATLNADFGYPILSLDFHPRDRDYLCCCDANDLIQLWNVYHNAYMKSFKGGTQQVRYQPRFGKLLAAASGKFINIFETENYKIRNKLEGHNKEVISICWDQTGNYIASVSEDEAHFWSAAPQGGLLHVLACKHGKFESCIFHPKYPNLVIIAGHKCLEFWIPQREHSLNFFDGGDGIFTGLATSPQNQRVASISRDRVKLWKISS 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4914g00011 430 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 69 427 IPR044716 GO:0003714
Gabi4914g00011 430 Pfam WD domain, G-beta repeat 311 337 IPR001680 GO:0005515
Gabi4914g00011 430 Pfam WD domain, G-beta repeat 140 174 IPR001680 GO:0005515
Gabi4914g00011 430 SUPERFAMILY WD40 repeat-like 149 429 IPR036322 GO:0005515
Gabi4914g00011 430 Gene3D - 278 430 IPR015943 GO:0005515
Gabi4914g00011 430 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 184 218 - -
Gabi4914g00011 430 Gene3D - 123 277 IPR015943 GO:0005515
Gabi4914g00011 430 SMART WD40_4 222 263 IPR001680 GO:0005515
Gabi4914g00011 430 SMART WD40_4 389 427 IPR001680 GO:0005515
Gabi4914g00011 430 SMART WD40_4 135 174 IPR001680 GO:0005515
Gabi4914g00011 430 SMART WD40_4 305 343 IPR001680 GO:0005515
Gabi4914g00011 430 SMART WD40_4 177 218 IPR001680 GO:0005515
Gabi4914g00011 430 MobiDBLite consensus disorder prediction 1 87 - -
Gabi4914g00011 430 ProSiteProfiles Trp-Asp (WD) repeats profile. 184 218 IPR001680 GO:0005515
Gabi4914g00011 430 MobiDBLite consensus disorder prediction 32 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4914g00011 Gabi-Chr4914 101056 104588 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4914g00011 160 342 U-box Gene Family AT2G33340 21.990 6.71e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4914g00011 - - tcc:18596824 279.256