Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4913g00005 ATGACGTCACACTCTCACTATCCATCAGAGTTGGACGCCGACTCGGTGGCCTCCTCTCCTCGCTCCGAACACTTCCACGAGCCGCTGCCACGTGTCCGCTTCATGTGCAGCTTCGGCGGCAAGATCCTCCCCCGTCCACACGACAACCAGCTCCGATACGTCGGCGGCGACACCCGAATCGTCGCCGTCCATCGCTCCATCTCCTTCTCCGCTCTCCTCCTCAAGCTCTCTAAACTCTCAGGCATGACTAACATAACGGCGAAGTACCAGCTTCCCAACGAGGATCTCGACGCGTTGATATCGGTGACGACGGATGAAGACGTGGAGAACATGATGGATGAGTACGACCGCGTGGCACACAATCAGAACCCACGATCGGCTCGGCTTCGACTCTTCCTCTTCAACGAAGGCGAAGACTCTCGAGCCAGCAGCATCAGCTCGCTCCTAAACGGCTCAGCCAACCGCGAGAACTGGTTCCTCGACGCCCTAAACGGCGGCGTTTCGGGGCTCGAACGAGGCCGCTCCGAAGCCTCTTCAATGGTTTCGGAAGTACCTGATTACCTCTTCGGGTTGGATAACTCAGACGAAACACACCACCACCCTCGCGAACCACGACCCAAGGACCGACCCGTTTTCCATGACAACGTTTCCAATTCGGATCCGGGTTCTCCTGCCCCGGTTCTCTCTTCCCCTTTTTGTTCCACGTCATCAGTACCCTGCGTGCCCTCTATCCCGAACCTTCCACCGGTTAAAACCAAACCCGCGAACCCGAATCCTGACATGGAGTTCAAGCAAAATCATATTGAAGCTGAAACGGGTGGGCAACCGCAACCGAACCCGTACCAACATAACCCTGTAGTACACTATTCCCCAGAAGCTGCTTATTCGGGTCATTCTGTACAACCGGTTCCTGTTTACTATGTTTCGGGTCCGGTTCAATCTGGTACTGTACCGGTCCAACCGGTTCCTATTCAGTCACCCTATCCCTACGTTCAACAACCATATCATGCAGTGGTGCAAGGTCAGGTTCCAATTGGGTACCATCATTTGGTTTCGGGTCCGGGTCAAGTTTTCGGTGCAGGGGTGAGGCATGTGACCCCAATGCATCCATATGAGTCGGCGGTTCACGGCGGTTTGAACCAGCAGGTGTACCAAGCCATGCCAAACTCAGGTATGGTTCCGGTTCATCCAGCGATGGCTATGACAGGTAGTAGGGACGAGACAGATAGAGGTGGAGCGGAGTTTGTGGCGGGTCGGGGCACCAACTCGCTAAATAACTGA 1281 0.5527 MTSHSHYPSELDADSVASSPRSEHFHEPLPRVRFMCSFGGKILPRPHDNQLRYVGGDTRIVAVHRSISFSALLLKLSKLSGMTNITAKYQLPNEDLDALISVTTDEDVENMMDEYDRVAHNQNPRSARLRLFLFNEGEDSRASSISSLLNGSANRENWFLDALNGGVSGLERGRSEASSMVSEVPDYLFGLDNSDETHHHPREPRPKDRPVFHDNVSNSDPGSPAPVLSSPFCSTSSVPCVPSIPNLPPVKTKPANPNPDMEFKQNHIEAETGGQPQPNPYQHNPVVHYSPEAAYSGHSVQPVPVYYVSGPVQSGTVPVQPVPIQSPYPYVQQPYHAVVQGQVPIGYHHLVSGPGQVFGAGVRHVTPMHPYESAVHGGLNQQVYQAMPNSGMVPVHPAMAMTGSRDETDRGGAEFVAGRGTNSLNN 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4913g00005 426 Pfam PB1 domain 47 135 IPR000270 GO:0005515
Gabi4913g00005 426 Gene3D - 52 136 - -
Gabi4913g00005 426 SMART PB1_new 46 134 IPR000270 GO:0005515
Gabi4913g00005 426 MobiDBLite consensus disorder prediction 189 228 - -
Gabi4913g00005 426 MobiDBLite consensus disorder prediction 403 426 - -
Gabi4913g00005 426 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 51 136 - -
Gabi4913g00005 426 CDD PB1_UP2 35 134 - -
Gabi4913g00005 426 PANTHER OS05G0427100 PROTEIN-RELATED 13 363 - -
Gabi4913g00005 426 MobiDBLite consensus disorder prediction 1 23 - -
Gabi4913g00005 426 MobiDBLite consensus disorder prediction 192 214 - -
Gabi4913g00005 426 SUPERFAMILY CAD & PB1 domains 47 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4913g00005 Gabi-Chr4913 74919 76552 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4913g00005 21 178 MAP Kinase Kinase Kinase AT3G46920 40.252 2.27e-31 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4913g00005 - - gmx:100806717 643.654