Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4913g00004 ATGGGGAAAAAATCAGCGGCGGCGAAAGAGGAGGAGGAGGAGGCTCTGCCGGACCATCTCCGCTGCGGGCGCACGGACGGGCGGCAATGGCGGTGCCGGCGGAGAGTGATGGAGAAGCTGAAGCTGTGTGAGATTCACTACCTGCAAGGTCGCCATCGCCAATTCAAGGAGAAGGTTCCAGAGTCTCTGAAGCTTCAGAGAAAGAGCAAGAAGAATGACCCTTATGTTCTCAACAATGTGGAAATTAGGGCACGGAAAGCGTGCAAAATGGCGAAGAAAAAGAGGAAGCTTTCAGAGGGTTCAGAGGCATTGGTTGTTGGTCCTGCTAGGAAGAAGGCTTTGAAGCAAGGTGATATGCAGTTGGAGTTAATAAAGATGGTTCTCAAAAGAGAGGTTGAGAAGAGGAAAAAGATGAAGAACAACAACAACAACAACAACAACAAGAAAAAGAAGGAGGAGGAGGAAGATGATGAAGAAGGAGAGGAATTGAATTATAGCGAAGGAGAGTTGAGGAGAGAATTGCCCAATGGTGTAATGGCAATCTCTCCAGCTTCAACACCCCATGATTACAACAATGTGGGTTCACATTGTGATGTGAAAGTGGGTGTTGATCATAAAGCAGTTACGCCACGTTACTTCAGGTCCAAGAATGTTGAGAGGGTCCCTGTTGGGAAGTTGCAGGCTGTACCATATAAACCAAACTTGAAGAAAAGTAAGACTAAGAGGAAGAAGTGTCATTGGTGCCAGAGAAGTGATTCTTGGAATCTTATAAAGTGTTCGAGCTGTCTTAAGGAGTTTTTCTGCATGGATTGCATTAAAGAACGGTATTTTGACACTCAAAATGAAGTTAAGAAGGCATGTCCAGTTTGTCGAGGAACTTGCACTTGTAAGGACTGCTTGGAAAGTCAATCCAAAGACAGTGAAAGTAAGGAATATTTTGCTGGTAAAAGCAGAGTATGTAGAATATTGCATTTTCATTATTTGATCTGCATGCTCCTTCCAGTACTAAAGAAAATAAGTAAAGATCAGGATACTGAGCTAGAAACAGAAGCAAAAATTAAAGGGAAAAATATTTCTGAAATTCAAATCAAGCAGGTTGAATTTGGCTGCAATGAGAAAAATTACTGTAATCACTGCAAAACACCTGTTTTGGATCTCCATAGAAGCTGCCCTAGTTGTTCATATAGCCTATGCTTAAGCTGTTGTCAGAAATTAAGTCAAGAAAGAACTTCTGGAGAAGTTAAATCATCTATGTTCAAGCTACCTGATGAAATAAAAGCTTGCATTGCCAGTGATAGCTACACTTTGGATGAGAACGCCATTTCTAGTGGCAAATTCACTGATACTTCAATATTGCCCGAGTGGACAAATGGTAATGGTATGGATAGTGTATCATGCCTTCCCACAGAGCTTGGTGGTTGTGGTAATAGCTACCTTGATTTGAGATGTATTTTTCCCTCTAGTTGGATAAAAGAGATGGAAGTGAAGGCAGAAGAAATTATTTGCAGTTATGATTTTCCTGAAACCTCGGATAAAAGTTCAAGCTGCTCTTTGTGTTTTGACACTGATCAGAGTACTAACAGATATAAGCAGTTGCAAGAAGCAGCTCAAAGAGAAGATTCAATAGATAATTGCTTGTTTTGCCCCACAGTTTTGGACATCAGTGGTGATAACTTTGAGCACTTTCAGAAACACTGGGGAAAAGGTCATCCTATAGTAGTGCGAGATGTGCTCCAAAGTACATCAAATCTCAGTTGGGATCCCCTGATCATGTTCTGTACATATCTTGAGCAGAGCATTACAAGATATGAGAATAATAAGGACTTACTTGCATCTTGTTTGGAATGGTGTGAGGTGGAAATTAACATTAGGCAGTATTTTACTGGGTCTCTAAAATGTCGTCCTCAGAAAAACATTTGTCATGAGATGCTGAAACTAAAGGGGTGGCTTTCTTCCCAAATATTCAAAGAGCAATTTCCAGCTCATTTTGCTGAGGTAATTGATGCTCTACCAGTTCAAGAATACATGAATCCCATGTATGGTCTTCTGAATTTAGCTGCAAATTTGCCACGAGGGAGTGCAAAACATGACATTGGGCCATATGTCTATATTTCATATGGCTGTGCTGACAAAGAAGCTGATTGTGTGACAAAACTCTCCTATGACTCATATGATGTGGTTAATATTATGAGACATACCACGGATGTCCCCCTCTCTACTGAACAGCTTACGAAAATAAGAAAATTACTGAAAAAACACAAATCTCTGTGTCATATGGAGTCTTCAATTGCTACTGAGCAGCTGCAGGAACAGAAAGTAAAAGGAATAACATTATTGCCTGCTGAAGACATGGAACAAAAAGGCTTACACAGTATGGTTAAAGAAGAAATGGACTTTTTCAGGAGAGTCAATAGAACATCTTGCATCTCTACTGAAGCAAAAAAACCTGCTAGTCAGAGTTTAGACAGCAATATTTCCCAGGATGGAGAATGTGATTTCTTTTCTGATTCTGATTCTGAACCCTCTTTACTTCTCCATAGTACTGTTCAAACCACTAAATTGCCTGCAAACCATAATCCTAGAAATCCATCTGAAAGCTCAAACAGTGATAAAAATAAGTTTACTGTGCGTTCGGGTGCCCAGTGGGACGTCTTTCGTAGACAAGATGTACCAAAGCTCATAGAATACCTTAAAAGACATCATGATGAATTTTCTTATGGCCATAACTATCACAAGAAGATGGTTCATCCAATACTAGATCAGAGCATTTTTCTTGACAGTAATCACAAAATGAGACTTAAGGAGGAGTTTAAGATTGAACCATGGACGTTTCAGCAACATGTTGGAGAAGCTGTCATCATTCCTGCTGGATGTCCATACCAAATAAGGAATCCTAAGTGTTGTGTTCATGTGGCATTGGAATTCGTATCACCTGAAAATGTTAAGGAGTGTATACAGTTGATTGACGAGGTTCGACTATTGCCTGAAGACCATAAAGCTAAAGTAGACAAGCTGGAGGTGAAGAAAATGGCACTTTATAGCATGAGTACAGCAATCAAAGAAATACGTGAGCTTACATGCAAAACATGA 3090 0.4032 MGKKSAAAKEEEEEALPDHLRCGRTDGRQWRCRRRVMEKLKLCEIHYLQGRHRQFKEKVPESLKLQRKSKKNDPYVLNNVEIRARKACKMAKKKRKLSEGSEALVVGPARKKALKQGDMQLELIKMVLKREVEKRKKMKNNNNNNNNKKKKEEEEDDEEGEELNYSEGELRRELPNGVMAISPASTPHDYNNVGSHCDVKVGVDHKAVTPRYFRSKNVERVPVGKLQAVPYKPNLKKSKTKRKKCHWCQRSDSWNLIKCSSCLKEFFCMDCIKERYFDTQNEVKKACPVCRGTCTCKDCLESQSKDSESKEYFAGKSRVCRILHFHYLICMLLPVLKKISKDQDTELETEAKIKGKNISEIQIKQVEFGCNEKNYCNHCKTPVLDLHRSCPSCSYSLCLSCCQKLSQERTSGEVKSSMFKLPDEIKACIASDSYTLDENAISSGKFTDTSILPEWTNGNGMDSVSCLPTELGGCGNSYLDLRCIFPSSWIKEMEVKAEEIICSYDFPETSDKSSSCSLCFDTDQSTNRYKQLQEAAQREDSIDNCLFCPTVLDISGDNFEHFQKHWGKGHPIVVRDVLQSTSNLSWDPLIMFCTYLEQSITRYENNKDLLASCLEWCEVEINIRQYFTGSLKCRPQKNICHEMLKLKGWLSSQIFKEQFPAHFAEVIDALPVQEYMNPMYGLLNLAANLPRGSAKHDIGPYVYISYGCADKEADCVTKLSYDSYDVVNIMRHTTDVPLSTEQLTKIRKLLKKHKSLCHMESSIATEQLQEQKVKGITLLPAEDMEQKGLHSMVKEEMDFFRRVNRTSCISTEAKKPASQSLDSNISQDGECDFFSDSDSEPSLLLHSTVQTTKLPANHNPRNPSESSNSDKNKFTVRSGAQWDVFRRQDVPKLIEYLKRHHDEFSYGHNYHKKMVHPILDQSIFLDSNHKMRLKEEFKIEPWTFQQHVGEAVIIPAGCPYQIRNPKCCVHVALEFVSPENVKECIQLIDEVRLLPEDHKAKVDKLEVKKMALYSMSTAIKEIRELTCKT 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4913g00004 1029 ProSiteProfiles WRC domain profile. 16 62 IPR014977 -
Gabi4913g00004 1029 ProSiteProfiles JmjC domain profile. 678 992 IPR003347 -
Gabi4913g00004 1029 Gene3D Cupin 550 1001 - -
Gabi4913g00004 1029 SMART cupin_9 659 992 IPR003347 -
Gabi4913g00004 1029 SUPERFAMILY Clavaminate synthase-like 558 1013 - -
Gabi4913g00004 1029 MobiDBLite consensus disorder prediction 134 169 - -
Gabi4913g00004 1029 MobiDBLite consensus disorder prediction 134 154 - -
Gabi4913g00004 1029 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 17 1027 IPR045109 GO:0032454|GO:0033169
Gabi4913g00004 1029 Coils Coil 128 161 - -
Gabi4913g00004 1029 ProSiteProfiles Zinc finger RING-type profile. 245 291 IPR001841 -
Gabi4913g00004 1029 MobiDBLite consensus disorder prediction 852 873 - -
Gabi4913g00004 1029 Pfam JmjC domain, hydroxylase 879 975 IPR003347 -
Gabi4913g00004 1029 Pfam WRC 17 58 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4913g00004 Gabi-Chr4913 50672 56466 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4913g00004 17 143 GRF Transcription Factor Family AT4G37740 27.206 3.65e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gabi4913g00004 JmjC 1.5e-10 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4913g00004 K15601 - gmx:100810673 1519.6