Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4913g00001 ATGGGGAGAACACCTTGTTGTGAGAAGAATGGCCTCAAGAAAGGACCCTGGACACCAGAAGAAGACCAGAAACTTATTGATTACATTCAGAAACATGGGTATGGCACATGGAGAACACTCCCAAAAAATGCTGGATTGCAAAGGTGTGGAAAGAGTTGCCGTCTTCGTTGGACAAACTATCTCCGACCAGATATAAAGCGAGGTCGATTCTCATTTGAAGAGGAGGAGACGATAATTCAGCTACATAGCATTCTTGGTAACAAGTGGTCTGCAATTGCTTCTCGTCTACCAGGAAGGACAGACAATGAAATCAAGAATTATTGGAACACCCACATTAGAAAAAGGCTTATAAGGATGGGAATTGATCCTGTGACACATAGCCCACGGCTTGATCTTTTGGACCTCTCTTCAATTCTAAGTTCATCTCTTTATGGCTCATCACAAATGAACAACATCCAAAGGCTGCTTGGTACACAGTCAATGGTGAACCCTGAGCTTCTGAAGTTAGCTTCATCACTCTTCTCCACTCAGCAACATGAGAACCTCAACATCTGTGATCAAAATGGTACCCAAGAGAACCAGCTCTGTAATCCTCAAATTCAGAACCAAATCCCACACTACGTACAAATTCAGGACTCGGTTCTAGAAGCTTCTGGAGCAGCTTGCAGCACATTGACCACCCCTTGTGTTTCTTTGTCTACCACTCAAGCCGAAATGGTTGAATCAAATGTGAACACATACCCATCAATTTTCACCGACTTTGGCTCCCAACAACATTCTCAGCCAAGTGATTGGCATTGCAATGGAAATTCTTCAAGCACTGTGAAAGACTATTATGTCCCTCAATTTCCGAACTATAATTATTATAGTTATGATCATCATGCAAATCTTATGGACACTCCATTGTCCGAAAACTCCACTTTACTTTCCAATAATAGCAACCAGAACTTAAACTTCGGTTCAGTTCTATCGACGCCTTCGTCAGGCCCCACACCGTTGAATTCGAACTCAACTTATATCAGCACCGAGGATGAAACTGAAAGCTATGTCAGCAGCAACATATTGAAATTTGAAATCCCTGATATTTTAGGTGTAAATGAGTTCATGTAA 1110 0.4189 MGRTPCCEKNGLKKGPWTPEEDQKLIDYIQKHGYGTWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLIRMGIDPVTHSPRLDLLDLSSILSSSLYGSSQMNNIQRLLGTQSMVNPELLKLASSLFSTQQHENLNICDQNGTQENQLCNPQIQNQIPHYVQIQDSVLEASGAACSTLTTPCVSLSTTQAEMVESNVNTYPSIFTDFGSQQHSQPSDWHCNGNSSSTVKDYYVPQFPNYNYYSYDHHANLMDTPLSENSTLLSNNSNQNLNFGSVLSTPSSGPTPLNSNSTYISTEDETESYVSSNILKFEIPDILGVNEFM 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4913g00001 369 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 252 - -
Gabi4913g00001 369 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi4913g00001 369 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gabi4913g00001 369 CDD SANT 69 112 IPR001005 -
Gabi4913g00001 369 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gabi4913g00001 369 CDD SANT 16 61 IPR001005 -
Gabi4913g00001 369 Gene3D - 13 66 - -
Gabi4913g00001 369 Gene3D - 69 116 - -
Gabi4913g00001 369 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi4913g00001 369 FunFam Transcription factor MYB39 69 130 - -
Gabi4913g00001 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gabi4913g00001 369 FunFam MYB-related transcription factor 13 66 - -
Gabi4913g00001 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gabi4913g00001 369 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi4913g00001 369 SMART sant 13 63 IPR001005 -
Gabi4913g00001 369 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4913g00001 Gabi-Chr4913 9389 11180 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4913g00001 1 369 MYB Transcription Factor Family AT4G21440 53.671 1.88e-121 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi4913g00001 Myb_DNA-binding 9.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4913g00001 K09422 - gmx:778071 486.878