Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi490g00003 ATGACTACTTTAGAATCAGCTCTCGCCGTGTTCGCACCTCATCGTTTTTCCAATAACTATCGATTCACTGCAAAACCACCCCATTCCATAAAGTTCCATGGTCCCACCTCTCTCTTTTCTCTTTCCCAAAACCTACTCTTCTCTTCCAAGTCCACCTCCAAAACCCGAAAACTCTGCTTCGAGTTATGCTCTGCTTTGCAAGAGGTAGCAGCAACACCAACAACAGAGGAAGAACCAGAGCAAACCCAACCAACAAACAACGCCAAGACGAAGCTCTACGTGTTTAACATACCTTGGTCTCTCTCATCGTCAGACATCAAGGAACTCTTTGGCCAATGCGGAACTGTAACCGACGTCGAGATAATAAAGAACAAAAATGGGAAGAGCAGAGGATTCGCCTTCGTTACTATGGCTTCTGGGGAAGAGGCTCAGGCTGCTGTTGATAAATTTGACTCTCATGAAATATCAGGACGGATAATAAGGGTAGCGCTTGCAAGGAGGTTCAAGAAACCTCCTCCTCCACGTCCTCCAGGCCCCCCTCCTGGTGAGACACGTCATGTAATTTATGTATCCAACCTTGCATGGAAAGCAAGATCTACCCATCTCAGAGAACTCTTTACTGAGAATTTTAAGACGCCAGCTACAGCCAGAGTTGTCTTCGACAGCCCTTCTGGAAGATCTGCTGGGTATGGATTTGTTTCTTTTCTTACAAAGGAGGAAGCTGAGGCTGCCATTTCTGCTATGGATGGGAAGGAGTTAATGGGACGACCACTTCGCCTCAAATTCAGTGAAAAGAAAGTTAAAGAAGCTGGAAGTGAAAACAATGATGAAGACCAAGTTGATGATGCTCAGCTGGAAGAATCATAA 867 0.4556 MTTLESALAVFAPHRFSNNYRFTAKPPHSIKFHGPTSLFSLSQNLLFSSKSTSKTRKLCFELCSALQEVAATPTTEEEPEQTQPTNNAKTKLYVFNIPWSLSSSDIKELFGQCGTVTDVEIIKNKNGKSRGFAFVTMASGEEAQAAVDKFDSHEISGRIIRVALARRFKKPPPPRPPGPPPGETRHVIYVSNLAWKARSTHLRELFTENFKTPATARVVFDSPSGRSAGYGFVSFLTKEEAEAAISAMDGKELMGRPLRLKFSEKKVKEAGSENNDEDQVDDAQLEES 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi490g00003 288 MobiDBLite consensus disorder prediction 265 288 - -
Gabi490g00003 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 265 IPR000504 GO:0003723
Gabi490g00003 288 SUPERFAMILY RNA-binding domain, RBD 171 268 IPR035979 GO:0003676
Gabi490g00003 288 Gene3D - 63 170 IPR012677 -
Gabi490g00003 288 Gene3D - 171 278 IPR012677 -
Gabi490g00003 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 167 IPR000504 GO:0003723
Gabi490g00003 288 PANTHER OS02G0815200 PROTEIN 24 265 - -
Gabi490g00003 288 SMART rrm1_1 187 261 IPR000504 GO:0003723
Gabi490g00003 288 SMART rrm1_1 91 163 IPR000504 GO:0003723
Gabi490g00003 288 SUPERFAMILY RNA-binding domain, RBD 80 180 IPR035979 GO:0003676
Gabi490g00003 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 259 IPR000504 GO:0003723
Gabi490g00003 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 160 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi490g00003 Gabi-Chr490 26279 30312 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi490g00003 90 266 Eukaryotic Initiation Factors Gene Family AT2G23350 32.461 6.79e-20 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi490g00003 - - gmx:100793319 365.54