Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi490g00002 ATGGCATCTCTAGGAAACCCAAGAACTTGGGTTCCATATATGAACAGCAAAGACTGTTCTCAAGGATTTTGTAGCTTGTACTGTCCACAGTGGTGTTATGTGGTCTACCCTCCTCCTCCTCCTCCTCCTTTTGAATTTCCTGATGATGATTCAAGTCCAAATTTCTCCCCTCTCGTTATTACAATCATTGGGATCTTGATCAGTGCTTTTCTTCTTGTGAGTTACTATGCTATAATATCCAAGTACTGTGGTGGCAGAGAATCTTCACAAAGGGAAAACCATGAAGCAAACGTTGAATTGGAAGAGAATCATAACCCTTCACTCCATGAGCCGTGGCATGTTTCAACCACAGGCTTAGATGAGGCTTTGATTAAGTCCATAACAGTTTGCAAGTACAAGAAAGGTGATGGTTTGGTTGATGTAATAGATTGCTCCGTTTGTCTCAGTGAGTTTCAAGATGATGAAAGTATTAGACTCTTGCCAAAGTGCAGCCATGCTTTTCATCTTCCTTGCATAGACACATGGTTAAAATCTCACTCCACTTGCCCTCTATGTCGTGCTAGCATATTTACCTTCAATGCTGCAGCATTTAATGTTCCAGTCCCAGTGATAGAACTTCCTTCAAGGAACGAAACTTCTTCAGCAAATCAACATGCAGATGAAAACTTAGCTGTTGGAAGAAACAGTGAATTGGATGCAGTGGAAGAAGAAAGCATGCATGTTAGAGCAGTTCCAAAGACTGCATTGCGTGCTTTTAGTGATTTAAGCAATTTGCAGGGAAGGCATAGTATAATTGAGATTAGAGATGAAGACTATGAATCTATTAGAAGGTCAGTATCCATGGATCATTCATTCCAAAGTGGTCTTTCAGTTGCTGATGTTCTGAACATGAATCAAGACCAAGATTCCCAAGTAGAAGGATGTTCTAATGAAGTTGGTCCATCAAAGAGATCAAGTGGTGAAAGTAGCAAGTCTAGTAGCTATAGAAGAAGGGTTTTGCATTGTGTTTTGAGTCCAATTACAATGAAGAGATCCTTTTCCAGTGGAAGATTCTCGCTTACTAGGAATGGCAGAGGAAAGCAGGGGATTTTGCCTGTCTGA 1101 0.4069 MASLGNPRTWVPYMNSKDCSQGFCSLYCPQWCYVVYPPPPPPPFEFPDDDSSPNFSPLVITIIGILISAFLLVSYYAIISKYCGGRESSQRENHEANVELEENHNPSLHEPWHVSTTGLDEALIKSITVCKYKKGDGLVDVIDCSVCLSEFQDDESIRLLPKCSHAFHLPCIDTWLKSHSTCPLCRASIFTFNAAAFNVPVPVIELPSRNETSSANQHADENLAVGRNSELDAVEEESMHVRAVPKTALRAFSDLSNLQGRHSIIEIRDEDYESIRRSVSMDHSFQSGLSVADVLNMNQDQDSQVEGCSNEVGPSKRSSGESSKSSSYRRRVLHCVLSPITMKRSFSSGRFSLTRNGRGKQGILPV 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi490g00002 366 PANTHER RING-H2 FINGER PROTEIN ATL16 43 326 IPR044600 GO:0016567|GO:0016740
Gabi490g00002 366 SMART ring_2 144 185 IPR001841 -
Gabi490g00002 366 SUPERFAMILY RING/U-box 124 192 - -
Gabi490g00002 366 MobiDBLite consensus disorder prediction 301 327 - -
Gabi490g00002 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 193 IPR013083 -
Gabi490g00002 366 MobiDBLite consensus disorder prediction 301 322 - -
Gabi490g00002 366 CDD RING-H2_EL5-like 143 186 - -
Gabi490g00002 366 FunFam RING-H2 finger protein ATL54 119 192 - -
Gabi490g00002 366 Pfam Ring finger domain 143 186 IPR001841 -
Gabi490g00002 366 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi490g00002 Gabi-Chr490 20859 21959 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi490g00002 6 366 C3H Transcription Factor Family AT5G17600 42.473 3.50e-70 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi490g00002 - - gmx:100792267 572.392