Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi490g00001 ATGGCTTTAGAAACTCTTTCATCTAATGAGTTTTCCAACTTCATTATCTATGACACTATCTCTGCAACACCATTTAGCAACCATGACTCTTCAGAGACTAGTTTCTTATTAGAAGAAAATAGAGTGAAATATCATGAACGTGACCCTGCATTTGATAACAATGCATTGGGGACACGAAAACGCAAAGCTGGCGAACCAGAAGCCACTGGCAGGAGGAAGAAGAGAAGAAGAAAGCCAAGGGTGTGCGAGAACAAAGAAGAGGCTGAGACTCAAAGAATGACCCACATTACAGTAGAAAGAAATCGCCGGAAGCAGATGAATGAGCATCTTGCTGTTCTGCGTTCACTCATGCCTGAATCCTACGTTCAAAGGGGTGACCAGGCCTCTGTAGTGGGTGGCGCTATAGAATTTGTTAAGGAGCTGGAGCACCTCTTGCAGTCCCTTGAGGCTCAAAAGTTGCAGCTTTTACATCAAGGAGTAGCAAAAACCAGTGAAGATACGGCCATTTCCAAATTCATGAGACCCCCTTTTGCTCATTTTTTTGAGCATCCTCAGTACACATGGTCCCAGGCTCCTAACAAATACACATCTAAAACTAAGGCAGCCATAGCTGATATTGAGGTAACTTTGATCGAGACCCATGCAAATCTTCGAATTCTCTCGCGGAGAAGCCCCACGAAGTTATCAAAGTTAGTTGCTGGCTTTCAAACACTCAACCTAACCATCCTACATCTCAATGTCACCACCATAGACCCCTTAGTACTCTATTCTATCAATGCCAAGGTTGAAGAAGGATGCCAACTTGGTTCAGTAGATGACATTGCAACGGCAGTTCACCACTTGCTTAGAATGATTGATGACGAAGCTTCCCTTTGCTGTTAA 882 0.4376 MALETLSSNEFSNFIIYDTISATPFSNHDSSETSFLLEENRVKYHERDPAFDNNALGTRKRKAGEPEATGRRKKRRRKPRVCENKEEAETQRMTHITVERNRRKQMNEHLAVLRSLMPESYVQRGDQASVVGGAIEFVKELEHLLQSLEAQKLQLLHQGVAKTSEDTAISKFMRPPFAHFFEHPQYTWSQAPNKYTSKTKAAIADIEVTLIETHANLRILSRRSPTKLSKLVAGFQTLNLTILHLNVTTIDPLVLYSINAKVEEGCQLGSVDDIATAVHHLLRMIDDEASLCC 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi490g00001 293 SMART finulus 96 147 IPR011598 GO:0046983
Gabi490g00001 293 Gene3D - 82 158 IPR036638 GO:0046983
Gabi490g00001 293 Pfam Helix-loop-helix DNA-binding domain 91 142 IPR011598 GO:0046983
Gabi490g00001 293 CDD bHLH_AtFAMA_like 93 152 - -
Gabi490g00001 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 90 141 IPR011598 GO:0046983
Gabi490g00001 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 89 159 IPR036638 GO:0046983
Gabi490g00001 293 PANTHER MAX DIMERIZATION, MAD 51 289 - -
Gabi490g00001 293 MobiDBLite consensus disorder prediction 47 70 - -
Gabi490g00001 293 Coils Coil 138 158 - -
Gabi490g00001 293 MobiDBLite consensus disorder prediction 47 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi490g00001 Gabi-Chr490 14688 16272 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi490g00001 82 262 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 55.495 2.60e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi490g00001 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi490g00001 - - pvu:PHAVU_003G284500g 449.129