Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4907g00004 ATGGATGTGCCGAAACGCCGCTCCAATCGAACGACGTCTCTGAGGGACGCTTCCGAGTCCTCCAAGATGGAGGGCACTGGTAGCTGGGACGCCCTAGAGTGGACCAAGATTGAGTCATTTTCGCGCCACGTATCGCCTGCGAATCTGGATTTCTTGCTTGAGGCAGAGCGAGTTTTGGCCGAAGAACACGGCATTGTTCTTGTTAATACGGATGATGCGGGCATGTTGATGGTAACAAATTTTCGTCTTCTTTTTCTGAGTGAGGGAACTAGAAAAGTTATTGCCCTTGGAACAATACCACTAGCAACCATTGAGAAGTTTAACAAAATTACTGCAAAGGTTCAATCGAATGCTCGTCAATTAGACAAGACACCAACACAACGACTGCTCCAGGTGGTTGGAAAAGACATGAGAATTATAGTCTTTGGTTTCAGGCCTCGTACAAAACAGAGACGTGTTATATTTAATGCACTGCTGAAGTGTACAAAGCCAACCAGACTCTGGGATCTTTATGCTTTTACATCTGGACCTTCTAGGTTTAAGAACACTACTCCACTGGTGCGCTTGTTGGATGAGTATTTTCGACTTCTTTGCAAAGGTTCTTATCGTGCATCAATCAATATGATTGAAAGCGGGTCCTTCACCTTGTCAAATGACTTATGGAGAATAAGTAATGTGAATTCCAATTATACAATGTGCCAGAGTTATCCATTTGCTTTGCTTGTTCCAAATATCATCAGCGATGACGAAGTGCTCCAGGCTTGTAGCTTCCGTGCAAGATGTCGATTGCCTGTAGTTTCATGGTGTCATCCTGGTACCGGAGCAGTTCTTGCACGTTCTTCCCAACCCTTAGTTGGTCTCATGATGAATATGAGGAGCAACATGGATGAAAAACTCGTGGCTGCACTTTGCAGCAAACTTGATGATGGCTCAAGGAGAAAGCTATATATTGCTGATGCGAGGCCAAGGAAAAATGCATTAGCTAATGGAGCCATGGGAGGTGGTTCGGAATCATCATCGAACTATTTTCAATCTGAGATAGTTTTTTTTGGGATTGAAAACATCCATGCAATGAGAGACAGCTTTGCTCTGCTCCGAGAATACATGGACACTCACGGCAGAGCATCATCAGATGGAATGTCATCTTTTTTGAGACATGGTGGGTCGACATGGGGTGGTGGCAATTTAAGTAGTATGTCTGCTTCGGTATCAACCCTTGGGGACAGTGGATGGTTACTGCATGTTCAAAGTGTCTTGGCTGGTGCAGCTTGGATTGCTGCTCGAGTTGCGATAGAAAAAGCTTCTGTTCTTGTACATTGCAGTGATGGATGGGACAGGACAAGCCAGTTGGTTTCACTTGCTAATTTGTTGCTTGATCCATATTATCGGACATTCACAGGGTTTCAGGCTCTTGTTGAAAAAGATTGGCTAGCATTTGGTCATCCATTTTCCGAACGTCTGGGAACGCCATCTGTCTCTGGAAGTGGCAACATGCCTTTCGAGTTATCTAGGCAGTCTTCGACTGGCAATATCCCATCATCATCCATGCGCCAGTCATCTGGAGCATTCCCATCTCAACCTCCGGCTTCATCTCATGCACATTCTTCAAACAACTGCTCTCCCATTTTTTTGCAGTGGGTTGATTGTGTTTCACAATTGTTGCGGATGTATCCTTTTGCTTTTGAGTTTTCTGCGGCTTTCCTGGTGGACTTCTTAGATGGCGTGCTTTCTTGTCGTTTTGGAAACTTCTTATGTAATAGTGAGAAGGAGAGGAAGCAATGCAATGTTTTTGAAGCTTGTGGATGTTTGTGGGTATACTTGGCTGATTTGAGGACATCAGGAGTTTCCCATGTGCATTATAATCCCTTTTTTGATCCGCTGAAGCACAATGGTCCTCTTCTGCCCCCAGCAGCAGCGTTAGCCCCAATTTTATGGCCCCAATTCCACCTTCGTTGGGCATGCCCTGAAGAAGCACAAGCTGGGGAGATTGAAGCGCAATGTAGGAAGATTATTATGAAATTCTCTGAGATGCAGAAGGCTAAAGAAGCTGCAGAACGGAAAGCTAAAGAAATTACAAATGCCATGGAATCATTGAACGCTGAATTACGACATGAGAAGCTGCAAAACAGCTCAGCTATGAACATTGCCAAGAGGACAAGCAAAGAAAATATGGCCATAAAGCGCGCAATTCAGTCAATTGGGTGCAAGGTTCAGTTCTCTGGTAGTGGTGATTGCACGGTTGACATTGAAAGCAACCCAGTGGAAGCACCACAAAACTTTTCGTATTGTTCCCCGATGAAAGAATCAGATTGTACTGTGCGTGATGACAAAAAGGATCTATCTGTTTCAATAACAGTTACAGCAGATGATGATCATGGAAACAATGGCATTCGTCGAGTATGTGAAACTCTCTGCCCTTTTCGCTCTGCAGATGGAGGCTGCAGGTGGCCAAATGGTGGTTGTGCTCAACTAGGTAGCCAATTTGTTGGTCTGAAGGCAAATTTTGATGCATTTGACCAATTATCAATTGACGATAGTTATTTCAAGTCTGAGTAA 2556 0.4437 MDVPKRRSNRTTSLRDASESSKMEGTGSWDALEWTKIESFSRHVSPANLDFLLEAERVLAEEHGIVLVNTDDAGMLMVTNFRLLFLSEGTRKVIALGTIPLATIEKFNKITAKVQSNARQLDKTPTQRLLQVVGKDMRIIVFGFRPRTKQRRVIFNALLKCTKPTRLWDLYAFTSGPSRFKNTTPLVRLLDEYFRLLCKGSYRASINMIESGSFTLSNDLWRISNVNSNYTMCQSYPFALLVPNIISDDEVLQACSFRARCRLPVVSWCHPGTGAVLARSSQPLVGLMMNMRSNMDEKLVAALCSKLDDGSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFFGIENIHAMRDSFALLREYMDTHGRASSDGMSSFLRHGGSTWGGGNLSSMSASVSTLGDSGWLLHVQSVLAGAAWIAARVAIEKASVLVHCSDGWDRTSQLVSLANLLLDPYYRTFTGFQALVEKDWLAFGHPFSERLGTPSVSGSGNMPFELSRQSSTGNIPSSSMRQSSGAFPSQPPASSHAHSSNNCSPIFLQWVDCVSQLLRMYPFAFEFSAAFLVDFLDGVLSCRFGNFLCNSEKERKQCNVFEACGCLWVYLADLRTSGVSHVHYNPFFDPLKHNGPLLPPAAALAPILWPQFHLRWACPEEAQAGEIEAQCRKIIMKFSEMQKAKEAAERKAKEITNAMESLNAELRHEKLQNSSAMNIAKRTSKENMAIKRAIQSIGCKVQFSGSGDCTVDIESNPVEAPQNFSYCSPMKESDCTVRDDKKDLSVSITVTADDDHGNNGIRRVCETLCPFRSADGGCRWPNGGCAQLGSQFVGLKANFDAFDQLSIDDSYFKSE 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4907g00004 851 ProSitePatterns Tyrosine specific protein phosphatases active site. 438 448 IPR016130 GO:0016311|GO:0016791
Gabi4907g00004 851 PANTHER MYOTUBULARIN-RELATED 43 755 IPR030564 -
Gabi4907g00004 851 Gene3D - 61 162 IPR011993 -
Gabi4907g00004 851 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 212 653 IPR029021 -
Gabi4907g00004 851 MobiDBLite consensus disorder prediction 504 536 - -
Gabi4907g00004 851 SUPERFAMILY PH domain-like 52 174 - -
Gabi4907g00004 851 CDD PTP-MTM-like 261 552 - -
Gabi4907g00004 851 Coils Coil 674 708 - -
Gabi4907g00004 851 Pfam Myotubularin-like phosphatase domain 171 592 IPR010569 -
Gabi4907g00004 851 MobiDBLite consensus disorder prediction 1 25 - -
Gabi4907g00004 851 ProSiteProfiles Myotubularin phosphatase domain. 201 649 IPR010569 -
Gabi4907g00004 851 SMART gram2001c 38 111 IPR004182 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4907g00004 Gabi-Chr4907 42339 69477 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4907g00004 1 849 Protein tyrosine phosphatase (PTP) family AT3G10550 67.761 0.0 1165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4907g00004 K18081 - gmx:100781842 1418.68