Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4906g00006 ATGGCTCATGGTTCTACAAACCCAAATGATCTCAAAGTTATGAATGATTTCAGAAAAGGGTTGGAGAATCCAGAGCTTCTGAAATGGCCTGAGAATGGAGATGATCCCTGTGGCCCTCCTTCATGGCCTTATGTGTCCTGCTCTGGAGATAGAGTCAATCAGATTCAGGCTAAGAATCTGGGTCTTAAAGGATCATTACCTCAAAATTTCAACCAACTCTCAGAACTCTACAATTTGGGTCTTCAACGCAACAATCTTAGTGGGATGTTACCTACTTTTAGTGGATTATCCAAATTGGAATTTGCTTTCTTGGATTACAATGCATTTGATGCAATCCCATCTGATTTCTTTGATGGACTCAGCAGCATTCGTGTCCTGTCTTTGGAAGAAAATCCACTGAATGCTAGTAATGGGTGGTCATTTCCTGTGGATTTGGAAAAATCAGTGCAATTAACTAATCTTTCTCTGGTACATTGTAATTTAGTTGGACCATTGCCAGATTTTCTAGGCACATTGCCATCCCTCACAAGTCTGAGGCTTTCAGGCAACAGATTGTCTGGTTCCATTCCAGCTACTTTTACTCAATCTTCAATCCAGGTTTTGTGGTTGAATGATCAAGAGGGTGGTGGGTTGTCAGGCCCTATTGATGTTATTGCCTCAATGACTTTCCTAAGACAGCTTTGGTTGCATGGAAACCAGTTCACTGGGACAATTCCACAGAATATAGGAAATCTTACTTCCTTGCAGGAACTCAACCTCAACAGTAATCAACTTGTTGGCTTGATTCCAGAGTCCCTAGCAGATATGGACCTTGAGATACTGGTGTTAAATAATAACAAGCTAATGGGTCCTATACCAGAGTTTGCGGCTGCCAATTTTTCTTATGAGTACAATTTCTTTTGTCAACCTGAGCCTGGGCTTGAATGTGCCCCTCAAGTTACTGCACTGCTGGATTTTCTGGATAATCTGAATTACCCATCATTTCTCATTTCTGATTGGTCAGGTAATAAACCATGCACAGCCAGCCCAGGGCCTTGGTTTGGATTGAACTGCAATTCCAACTCGGAGGTAACTATAATCAATCTACCTAAGCACAAGCTCAATGGTACTCTAAGTCCTTCACTTGTCAAGTTAGATTCACTCCTTGAAATTAGACTTGCAGGAAATAATATAGCTGGTACAGTTCCTAGTGATTTTACTAAATTGAAATCTTTGAGGTTGTTGGATTTAAGTGATAACAATCTTGAGCCTCCATTGCCAAAATTTCATGATGATGTGAAGGTTATTATGGCGGGTAACCCTCTTCTTCCTAATCAAGCTGGAAGTCCTCCCATACCTATTAGCAGCCCACCACATGCAAATTCACCACCTTCACCACTCAACCCATCAAGTCCTCCTTCCTCTCATAAGCCTCATATTCCAAGTCAGAGTTCAAGCTCAAATCAATCCAAACCAAATGGTTTCAAAAGATTCAAAACAGTAGCAATAGTGGCTGGAGTTGCAGTCTTTGCATTTGTAGTTCTTTTGGTTGTTTATTTCTTTGTGTGCTGCTGGAAGAACAAAAAACCCTCCTTAGATGCTCCAAGTTCCATTGTGGTTCACCCTCGAGATCCATCTGATCCAGATAATGTGGTCAAAATTGCAGTTTCAAGCAACACCACTGGAAGCTTATCAGCAAAGACTGGGACAAGTTCTCTGAGTAACATTAGTGGTGAAACTTCAAACTCTCACCTATTTGATGCTGGCAACCTTGTCATCTCTGTACAAGTACTACGCAAGGTTACCAAGGATTTTGCTTCAGAAAATGAGCTAGGCCGTGGTGGGTTTGGAACTGTTTACAAGGGAGAACTAGAAGATGGGACAAAAATAGCAGTGAAGAGAATGGAGCATGGTGCTATTTACAGTAAGGCGCTGGAGGAGTTTGAAGCTGAAATAGCTGTTCTTTCCAAGGTCCGTCACCGACATCTGGTATCCCTCTTGGGGTATTCAATTGAAGGCAATGAAAGACTTTTGGTTTATGAGTATATGCCTCTTGGTGCTCTAAGCCAACATCTTTTTCATTGGAAAAGCTTGAACTTGGAGCCTTTGTCTTGGTCAAAGAGGCTCGCAATAGCACTAGATGTTGCTAGAGGGATAGAATACCTTCATGGTCTTGCCCGCCAGACCTTTATCCATCGAGATCTCAAGTCTTCTAATATTCTACTAGGTGATGATTTTCGGGCAAAAGTTTCGGATTTTGGTTTGGTGAAGCTTGCCCCGGATGGTGAGAAATCTGTAGTAACCAAGCTTGCTGGGACATTTGGATACCTTGCCCCTGAATATGCAGGTATTGCCTTGCTTTAA 2343 0.4195 MAHGSTNPNDLKVMNDFRKGLENPELLKWPENGDDPCGPPSWPYVSCSGDRVNQIQAKNLGLKGSLPQNFNQLSELYNLGLQRNNLSGMLPTFSGLSKLEFAFLDYNAFDAIPSDFFDGLSSIRVLSLEENPLNASNGWSFPVDLEKSVQLTNLSLVHCNLVGPLPDFLGTLPSLTSLRLSGNRLSGSIPATFTQSSIQVLWLNDQEGGGLSGPIDVIASMTFLRQLWLHGNQFTGTIPQNIGNLTSLQELNLNSNQLVGLIPESLADMDLEILVLNNNKLMGPIPEFAAANFSYEYNFFCQPEPGLECAPQVTALLDFLDNLNYPSFLISDWSGNKPCTASPGPWFGLNCNSNSEVTIINLPKHKLNGTLSPSLVKLDSLLEIRLAGNNIAGTVPSDFTKLKSLRLLDLSDNNLEPPLPKFHDDVKVIMAGNPLLPNQAGSPPIPISSPPHANSPPSPLNPSSPPSSHKPHIPSQSSSSNQSKPNGFKRFKTVAIVAGVAVFAFVVLLVVYFFVCCWKNKKPSLDAPSSIVVHPRDPSDPDNVVKIAVSSNTTGSLSAKTGTSSLSNISGETSNSHLFDAGNLVISVQVLRKVTKDFASENELGRGGFGTVYKGELEDGTKIAVKRMEHGAIYSKALEEFEAEIAVLSKVRHRHLVSLLGYSIEGNERLLVYEYMPLGALSQHLFHWKSLNLEPLSWSKRLAIALDVARGIEYLHGLARQTFIHRDLKSSNILLGDDFRAKVSDFGLVKLAPDGEKSVVTKLAGTFGYLAPEYAGIALL 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4906g00006 780 MobiDBLite consensus disorder prediction 440 469 - -
Gabi4906g00006 780 Gene3D Ribonuclease Inhibitor 311 439 IPR032675 -
Gabi4906g00006 780 SUPERFAMILY L domain-like 311 421 - -
Gabi4906g00006 780 Gene3D Phosphorylase Kinase; domain 1 559 675 - -
Gabi4906g00006 780 SMART serkin_6 598 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4906g00006 780 Pfam Leucine rich repeat N-terminal domain 311 352 IPR013210 -
Gabi4906g00006 780 Pfam Leucine rich repeat N-terminal domain 8 48 IPR013210 -
Gabi4906g00006 780 SMART LRR_typ_2 402 424 IPR003591 -
Gabi4906g00006 780 SMART LRR_typ_2 172 195 IPR003591 -
Gabi4906g00006 780 SMART LRR_typ_2 73 95 IPR003591 -
Gabi4906g00006 780 SMART LRR_typ_2 245 268 IPR003591 -
Gabi4906g00006 780 SMART LRR_typ_2 378 401 IPR003591 -
Gabi4906g00006 780 SMART LRR_typ_2 221 244 IPR003591 -
Gabi4906g00006 780 SMART LRR_typ_2 96 119 IPR003591 -
Gabi4906g00006 780 Pfam Protein kinase domain 600 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4906g00006 780 FunFam Receptor-like kinase TMK4 8 306 - -
Gabi4906g00006 780 Gene3D Ribonuclease Inhibitor 8 304 IPR032675 -
Gabi4906g00006 780 MobiDBLite consensus disorder prediction 440 485 - -
Gabi4906g00006 780 ProSiteProfiles Protein kinase domain profile. 598 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4906g00006 780 FunFam receptor protein kinase TMK1 560 675 - -
Gabi4906g00006 780 ProSitePatterns Protein kinases ATP-binding region signature. 604 626 IPR017441 GO:0005524
Gabi4906g00006 780 Pfam Leucine Rich Repeat 247 266 IPR001611 GO:0005515
Gabi4906g00006 780 FunFam Leucine-rich repeat receptor-like kinase 311 439 - -
Gabi4906g00006 780 MobiDBLite consensus disorder prediction 470 485 - -
Gabi4906g00006 780 Gene3D Transferase(Phosphotransferase) domain 1 676 777 - -
Gabi4906g00006 780 PANTHER OSJNBA0070M12.3 PROTEIN 6 776 - -
Gabi4906g00006 780 ProSitePatterns Serine/Threonine protein kinases active-site signature. 723 735 IPR008271 GO:0004672|GO:0006468
Gabi4906g00006 780 FunFam Os07g0541700 protein 676 766 - -
Gabi4906g00006 780 SUPERFAMILY Protein kinase-like (PK-like) 576 775 IPR011009 -
Gabi4906g00006 780 SUPERFAMILY L domain-like 6 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4906g00006 Gabi-Chr4906 24638 26980 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4906g00006 64 775 Receptor kinase-like Gene Family AT5G07280 31.250 3.08e-69 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Gabi4906g00006 PK_Tyr_Ser-Thr 1.3e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4906g00006 K00924 - gmx:100785090 1196.03