Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4906g00001 ATGGATCAGTATGAGATCATGGAGCAGATCGGTCGTGGAGCTTTTGGAGCTGCTATTCTTGTTAATCACAAGGCAGAGAAGAAGAAATATGTGTTGAAAAAAATCAGGCTTGCGCGCCAGACTGAACGCTGCAGAAGATCTGCTCATCAAGAGATGGCTCTTATTGCTAGAATTCAGCACCCTTATATTGTGGAATTCAAGAAGGCATGGGTTGAGAAGGGTTGCTATGTTTGCATTGTTACTGGCTACTGTGAAGGTGGAGACATGGCTGCATTGATGAAAAAATCAAATGGAGTTTACTTTCCTGAGGAGGTATTCTTTTGCTCACAATGGGAGGTGTTTGACATTGCTCAGAAACTGTGCAAGTGGTTTACTCAATTACTGTTGGCAGTTGAATACCTGCATTCAAATTTTGTTTTACATCGAGACCTAAAGTGTTCCAACATCTTCCTTACCAAGGATCAGAATGTTCGCCTAGGGGACTTTGGTCTTGCTAAGACACTAAAAGCGGATGATTTGGCTTCTTCG 528 0.4242 MDQYEIMEQIGRGAFGAAILVNHKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKKAWVEKGCYVCIVTGYCEGGDMAALMKKSNGVYFPEEVFFCSQWEVFDIAQKLCKWFTQLLLAVEYLHSNFVLHRDLKCSNIFLTKDQNVRLGDFGLAKTLKADDLASS 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4906g00001 176 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Gabi4906g00001 176 SUPERFAMILY Protein kinase-like (PK-like) 2 171 IPR011009 -
Gabi4906g00001 176 Pfam Protein kinase domain 4 171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4906g00001 176 SMART serkin_6 4 174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4906g00001 176 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 176 - -
Gabi4906g00001 176 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Gabi4906g00001 176 Gene3D Transferase(Phosphotransferase) domain 1 84 176 - -
Gabi4906g00001 176 ProSiteProfiles Protein kinase domain profile. 4 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4906g00001 176 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Gabi4906g00001 176 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4906g00001 Gabi-Chr4906 3147 4385 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4906g00001 1 174 AGC Kinase Gene Family AT1G30640 26.404 1.90e-19 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Gabi4906g00001 Pkinase 1.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4906g00001 K08857 - pvy:116138889 317.39