Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4900g00005 ATGGAGAACCTGTACGGCTTTCACTACTCAGAGCAGTCATCTATGGCTCCTCCGCCGCCGCTATTAACATCGACCAGTCACAACGTGATTTCATCAATCGGTGCCCAGTTAGTCCGGTCCGGACCGGCGCAGTTAGTCCGGTCCGGTTGTTCTTCATCGGATGCAGAGTCGTCTAAGGTTGTCTTGCAGCAGGACGAGGATGAGGTTTCCAAAGTTCTTGGTGCTAAAGTTGCTTCTCATCCTCTTTTTCCTCAGCTTCTCCATGCCTACATCGATTGCCAGAAGGTGGGAGCGCCGCCAGAGATGGCGCAACTATTAGATGAAATCAGAGGGGAGCATAGTGATGTGTGTCAGATATCTACCTTCTTCGGTGCTGATCCTGAGCTCGATGATTTCATGGATACGTATTGCAATTTATTGGTGAAGTTCAAATTGGATCTCTCAAGGCCTTTTGACGAGGCAACCGCGTTCCTCAACGACATGGAAACGAAGCTTAACTCCATCTGCAATGGTCCTCATGCCAGAAACAACACTCCTGAACCTGATGAAGTTACTGCGTCATCTGAGAAGGATTTTATTAGGAAGGAGAAAGAGGCAATAGAAAGCAAGAGGATAGTTGAAGTTCAAGAGCTGAAGGATAATCTGCAACGTAGATATAGCAGCTACATTAGTAGTCTAAAGCACGAGTTTTCCAAAAAGAAGAAGAAAGAAAAGCTACCAAAAGAAGCAAAGCAAATCTTACTTACATGGTGGAATATTCACTTTAAATGGCCATACCCAACGGACGCAGATAAGGTTGCCTTAGCTGAATGGACTGGCCTAGACCAGAAGCAGGTAAACAATTGGTTTATAAACCAAAGGAAGCGCCATTGGAAATCTGAAATGCAAGCTACACTTTCGGATGGTCTCTATGGACCTCTCTGCTTCAGTGAGAGTGACTAA 942 0.4575 MENLYGFHYSEQSSMAPPPPLLTSTSHNVISSIGAQLVRSGPAQLVRSGCSSSDAESSKVVLQQDEDEVSKVLGAKVASHPLFPQLLHAYIDCQKVGAPPEMAQLLDEIRGEHSDVCQISTFFGADPELDDFMDTYCNLLVKFKLDLSRPFDEATAFLNDMETKLNSICNGPHARNNTPEPDEVTASSEKDFIRKEKEAIESKRIVEVQELKDNLQRRYSSYISSLKHEFSKKKKKEKLPKEAKQILLTWWNIHFKWPYPTDADKVALAEWTGLDQKQVNNWFINQRKRHWKSEMQATLSDGLYGPLCFSESD 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4900g00005 313 Gene3D - 227 301 - -
Gabi4900g00005 313 SMART KNOX2_2 119 170 IPR005541 GO:0003677|GO:0005634
Gabi4900g00005 313 Pfam KNOX2 domain 124 169 IPR005541 GO:0003677|GO:0005634
Gabi4900g00005 313 SUPERFAMILY Homeodomain-like 231 300 IPR009057 -
Gabi4900g00005 313 Pfam ELK domain 210 231 IPR005539 GO:0003677
Gabi4900g00005 313 ProSitePatterns 'Homeobox' domain signature. 268 291 IPR017970 GO:0000981|GO:0006355
Gabi4900g00005 313 ProSiteProfiles 'Homeobox' domain profile. 230 293 IPR001356 GO:0003677
Gabi4900g00005 313 SMART ELK_2 210 231 IPR005539 GO:0003677
Gabi4900g00005 313 CDD homeodomain 245 294 IPR001356 GO:0003677
Gabi4900g00005 313 ProSiteProfiles ELK domain profile. 210 230 IPR005539 GO:0003677
Gabi4900g00005 313 SMART KNOX1_2 71 115 IPR005540 GO:0003677|GO:0005634
Gabi4900g00005 313 Pfam Homeobox KN domain 250 289 IPR008422 GO:0003677|GO:0006355
Gabi4900g00005 313 Pfam KNOX1 domain 75 112 IPR005540 GO:0003677|GO:0005634
Gabi4900g00005 313 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 52 296 - -
Gabi4900g00005 313 SMART HOX_1 232 297 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4900g00005 Gabi-Chr4900 92241 101497 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4900g00005 1 292 Homeobox Transcription Factor Family AT1G23380 49.677 1.94e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gabi4900g00005 KNOX2 7.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4900g00005 - - aprc:113874840 365.54