Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4898g00001 TCATTGGTTGGGATTGCGAAGGGGTCTCGTGATGTGATGGCGCTTTTTGGCGCCATTACGTTGCGAGAAAGCTTCGGGAATTGTGTCTTGCGGCAAAAATCGGATTTTGCACACTGGGTACGTGATCAACACAAAGATTGGTGTTGCGTTGGTACTTTACTGATAGATGCTATGAGGATGAAAAGGAAAGGAAGTGAGTGTGACGAGTCCTCGAAATTGACTGACATTTTGAGATCCAATCATGGGTCTCCGTCGTCCAATTTTGAGACCCATTATTCGATGGAAGATTGTTCGAGGTTGAAGAAGAGGTGTAGAGAAAATACTAAGATAGACTCAGCTGGTTCCTACAAGAGTAGGGTGGCGGGTTTTGCCACTGCTCCTCCTTGTGGGACATTGTCTCTGATGACCGTGGGAAGAGGCCTAAAGAGGAAGATAGGTTGCATTGACGTGGCTACCCAGATGGGGAGGAAGAACAAGATTGAAGATGATTATGTTACTGGGGTGAGGATCGGGCAAGGAAAGTATGGATCTGTTTCGTTGTGTAGGTCTCTTGTTGGCGGCGCGGAGTATGCGTGTAAGACTCTGAAGAAGGGGGATGAGACTGTTTACAGGGAGGTGGAGATAATGCAGCACTTGTCTGGGCATCCTGGGGTTGTGACTCTGCTGGCAGTGTATGAGGAAGCTGATTGCTCTCATCTGGTGATGGAATTGTGCTCTGGGGGAAGACTTGTCGACCAGATGTTTAGGGAGGGCCCTTGTTCTGAACAGCGGGCTGCTAATATACTTAAGGAAGTGATGTTGGTCATCAAGTATTGTCATGATATGGGAGTTGTGCACAGAGATATCAAGCCTGAGAATATTCTGCTTACTGCTTCGGGGGAAATAAAGCTTGCTGATTTTGGCCTGGCCATGAGAATTTCTAAGGGTCAGAACTTGACGGGTTTGGCTGGGAGCCCTGCATATGTTGCACCAGAAGTGTTGTTGGGTAGATACTCAGAAAAGGCGGATATATGGAGTGCTGGAGTGCTCCTGCATGCTCTGTTGGTTGGTGTTCTTCCATTCAAAGGGGATTCACAAGAAGCAGTTTTTGAGGCTATTAAGAATTCCAAGCTAGAGTTCCAAACCGGGATGTGGGAATCAATATCTAAACCTGCACGAGATCTTGTTGGGAGAATGCTGACAAGGGATATTTCAGCAAGGATAACAGCTGATGAA 1215 0.4708 SLVGIAKGSRDVMALFGAITLRESFGNCVLRQKSDFAHWVRDQHKDWCCVGTLLIDAMRMKRKGSECDESSKLTDILRSNHGSPSSNFETHYSMEDCSRLKKRCRENTKIDSAGSYKSRVAGFATAPPCGTLSLMTVGRGLKRKIGCIDVATQMGRKNKIEDDYVTGVRIGQGKYGSVSLCRSLVGGAEYACKTLKKGDETVYREVEIMQHLSGHPGVVTLLAVYEEADCSHLVMELCSGGRLVDQMFREGPCSEQRAANILKEVMLVIKYCHDMGVVHRDIKPENILLTASGEIKLADFGLAMRISKGQNLTGLAGSPAYVAPEVLLGRYSEKADIWSAGVLLHALLVGVLPFKGDSQEAVFEAIKNSKLEFQTGMWESISKPARDLVGRMLTRDISARITADE 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4898g00001 405 SUPERFAMILY Protein kinase-like (PK-like) 158 405 IPR011009 -
Gabi4898g00001 405 ProSiteProfiles Protein kinase domain profile. 164 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4898g00001 405 SMART serkin_6 164 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4898g00001 405 Gene3D Transferase(Phosphotransferase) domain 1 155 405 - -
Gabi4898g00001 405 ProSitePatterns Protein kinases ATP-binding region signature. 170 193 IPR017441 GO:0005524
Gabi4898g00001 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 277 289 IPR008271 GO:0004672|GO:0006468
Gabi4898g00001 405 FunFam Maternal embryonic leucine zipper kinase 156 405 - -
Gabi4898g00001 405 CDD STKc_CAMK 163 405 - -
Gabi4898g00001 405 PANTHER SERINE/THREONINE-PROTEIN KINASE 150 405 - -
Gabi4898g00001 405 Pfam Protein kinase domain 165 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4898g00001 Gabi-Chr4898 10528 12422 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4898g00001 148 405 EF-hand Containing Proteins AT2G38910 42.007 6.99e-72 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi4898g00001 Pkinase 1.8e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4898g00001 - - gmx:100812729 555.444