Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4897g00004 ATGGAAAGAATTTCTATCTGGGTAGTCTTCATTACATCCCTTTTCCTGTTAAACATGACCAATTGTGTGGAGGATGAGGTCAAGGGAACACTGATACAATTTCTGGCACAAATCACTGGTAATAGTAGCCAACAGAATTCCACTTTGGTTTGGAAACAAGACTCTGATCCCTGCAAGGACCTTTGGCAAGGTGTATACTGTGATGAACAAAATATTTCTATAAAGAGGTTGTATCTTAATAGGTCCAACTTGAGTGGAACTCTTGATGTTGCTATGTTTTGCAATTTGCAGCCCCTAGCTGCATCTCTCACCTTTCTCAGTCTTGATGGCAACAACATTAGTGGAGGGATAGCATCTGAGATTGGAAACTGCACACAACTCACTCGGCTGCATGTAAGTGGAAACCAACTTGCTGGTAACCTTCCAAGTTCACTTGCCATGTTAGATAATTTGAAAAGTCTAGACATTTCAAACAACAAGTTTTCAGGTCCCTTGCCAGACTTGTCTAGAATCTCAGGACTGAATGTGTTCCTTGCACAAAACAATGACCTCAGTGGAGATATACCCTCATTTGATTTCTCCAATTTGGACCATTTCAATGTCTCCTTCAACAATTTCAGAGGCCTCATTCCTGATGTGCATGGCCATTTCTTAGCAGATAGCTTCCTTGGTAATCCTGAACTCTGTGGAGATCCACTACCAAAAAATTGTTCTGGGTTGACTCTTCCTGTTAATGAGACATCATCAGAAGAATCAAAGGGATCAAATGGTCCTTCTAAAGACCAAATTCTTATGTATTCAGGCTATACTGCATTGGGAGTTGTTTTTATCCTTTTTGTAGTCTTTAAGCTGTGTAGAAGAAAGAAAAAAGAAAAGAAAGTTGAAGCATTGAATGGGGTAGTGACAAATGGTGGTAGTGAAAAGCCCAGCAATGTTTCAAGTGAATACAAAACTGAGGTAAGCAGATCCGAGTTTTCAGTCACTTCTGAAAGTGGGATGGTTTCACAATCACTTGTAGTTCTTTCAAGGCCAGTGATAAATGAACTAAAATTGGAAGACTTGCTGAGAGCCCCTGCTGAATTGATTGGCAGAGGAAAGAATGGAAGTCTTTTTAAGGTGATGCTTGACAATGGGATTATGGTGGTTGTAAAAAGGATCAAGGATTGGACTATTTCCAGCCATGACTTCAAGCAAAGAATGCAAATGCTGAGTCAAACAAAGCACCCTCATGTACTATCACCTCTAGCTTTCTATTGTTCCAAACAAGAGAAACTTTTGGTCTATGAATATCAGCAGAATGGAAGCTTATTCAATCTTCTACATGGTACAACAAAAACCTTTGACTGGACCAGCAGACTTGGAATTGCAGCTACAATAGCTGAGGCAATAACTTTCATGCATCAAGAGCTTGGCCAACATGGTATTGTTCATGGTAATCTAAAATCGTCAAATATTTTGCTAAACAAAAATATGGAGCCATGTATAAGTGAGTATGGTGTTATGAGTATGGAAGATAAAAAAAGTTCACCTTTTGCAAGTCCTATTGCTGCTGGTGCATCAAATGTCTTCAAGGAAGATGTTTATGGCTTTGGTGTTATACTTCTTGAACTACTTACTGGAAAGTTAGTGAAGAGCAATGGAATTGACTTGACTGAATGGGTTCAATCAGTTGTAAGAGAAGAATGGACAGGTGAAGTTTTTGACAAGTTCCTAATATCAGAGTATGCAAGTGAAGAGAGGATGGTCAATTTGCTTCAGGTGGCTATAAGATGTGTCAATCGTTCCCCAGAGGCTAGGCCAAGTATGAACCAAGTTGCTCTCATGATTAACACTATAAAAGATGAAGAAGAAAAATCCTTGACTTATGAAGTGTGA 1875 0.3925 MERISIWVVFITSLFLLNMTNCVEDEVKGTLIQFLAQITGNSSQQNSTLVWKQDSDPCKDLWQGVYCDEQNISIKRLYLNRSNLSGTLDVAMFCNLQPLAASLTFLSLDGNNISGGIASEIGNCTQLTRLHVSGNQLAGNLPSSLAMLDNLKSLDISNNKFSGPLPDLSRISGLNVFLAQNNDLSGDIPSFDFSNLDHFNVSFNNFRGLIPDVHGHFLADSFLGNPELCGDPLPKNCSGLTLPVNETSSEESKGSNGPSKDQILMYSGYTALGVVFILFVVFKLCRRKKKEKKVEALNGVVTNGGSEKPSNVSSEYKTEVSRSEFSVTSESGMVSQSLVVLSRPVINELKLEDLLRAPAELIGRGKNGSLFKVMLDNGIMVVVKRIKDWTISSHDFKQRMQMLSQTKHPHVLSPLAFYCSKQEKLLVYEYQQNGSLFNLLHGTTKTFDWTSRLGIAATIAEAITFMHQELGQHGIVHGNLKSSNILLNKNMEPCISEYGVMSMEDKKSSPFASPIAAGASNVFKEDVYGFGVILLELLTGKLVKSNGIDLTEWVQSVVREEWTGEVFDKFLISEYASEERMVNLLQVAIRCVNRSPEARPSMNQVALMINTIKDEEEKSLTYEV 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4897g00004 624 ProSiteProfiles Protein kinase domain profile. 356 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4897g00004 624 Gene3D Phosphorylase Kinase; domain 1 324 430 - -
Gabi4897g00004 624 SUPERFAMILY L domain-like 39 216 - -
Gabi4897g00004 624 Gene3D Transferase(Phosphotransferase) domain 1 432 623 - -
Gabi4897g00004 624 Pfam Protein kinase domain 360 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4897g00004 624 SUPERFAMILY Protein kinase-like (PK-like) 359 608 IPR011009 -
Gabi4897g00004 624 Gene3D Ribonuclease Inhibitor 170 239 IPR032675 -
Gabi4897g00004 624 FunFam Leucine-rich repeat receptor protein kinase EMS1 91 191 - -
Gabi4897g00004 624 ProSitePatterns Protein kinases ATP-binding region signature. 362 384 IPR017441 GO:0005524
Gabi4897g00004 624 PANTHER OS05G0588300 PROTEIN 9 614 - -
Gabi4897g00004 624 Gene3D Ribonuclease Inhibitor 21 96 IPR032675 -
Gabi4897g00004 624 Gene3D Ribonuclease Inhibitor 97 169 IPR032675 -
Gabi4897g00004 624 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4897g00004 Gabi-Chr4897 89726 91983 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4897g00004 1 613 Receptor kinase-like Gene Family AT3G08680 33.488 2.03e-93 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gabi4897g00004 Pkinase 1.9e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4897g00004 - - gmx:100813796 988.023