Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi4891g00152 | ATGGAATCAGGAAATCCCTCATCAACGCCAGATCCAGATCCTTCATCGCCGACATCTCCTTCTGCTAATTTCAACACAGACCAGCTTCCTCACACTCACACAAGCCGTGCCTCTGAAGACGACGAGGCTTCCGTTGATCCCGAGGTCATACGAGATGAACCTGAAGAAGAACAACCTAACGAAGAAGAAGAAGATGGAGAAGATCTTTATAATGATAACTTCATGGATGATTATCGGAGAATGGACGAGGCTGACCAGTTCGAATCAGTTGGGCTGGATGACACTTTGGAGGACGATAGGGATTTCGATCAGATCATGGAGGATCGAAGGGCTGCAGAGAATGAACTCGACGCACGTGAAGGTCGCATTTCTAATCGCAACAAGCTTCCTCAGCTTCTCCACGACCAGGATACAGATGATGACAGCTACAGGCCTTCCAAAAGGGCTCGAGCCAGGCCTCCTATACCAAGCGATGATGATGTTGATGGGATGCCAAGTTCCCCTGGAAGGTCACAAGGAGGACACTCAAGAGAGGATGTTCCAATGACTGATCCAACTGAGGATGATCCAGATGATGATGGATATGATGACGAAGGTGAGTATGAGATGTACCGAGTTCAAGGGACACTTAGAGAGTGGGTTACAAGAGATGAAGTGCGCCGCTTCATAGCCAGGAAATTCAAGGATTTCTTACTGACATATGTTAATCCAAAAAATGAACCCGGCGACTTTGAATATGTGCGGCTGATAAACGAGATGGTGTCAGCTAATAAGTGCAGTTTGGAGATAGATTACAAACAATTTATCTATGTCCATCCCAACATCGCCATTTGGCTGGCTGATGCACCTCAGTCCGTTTTAGAAGTAATGGAAGATGTTGCCAAAAACGTTGTCTTTCAGTTACATCCAAATTATAGAAATATACATCAGAAGATTTATGTTCGCACCACCAACTTACCAGTTTATGATCAGATTCGAAATATAAGGCAGATCCACTTGAATACAATGATCCGAATTGGGGGAGTAGTAACTAGGCGCTCCGGAGTTTTCCCCCAGTTACAACAAGTGAAGTATGACTGTAGCAAATGCGGGGCAATTTTGGGACCTTTTTTTCAGAGTTCATATTCAGAGGTGAGAGTTGGATCCTGTCCCGAGTGTCAATCAAAAGGGCCGTTCACTGTCAATATTGAGCAGACAATTTACAGGAATTTTCAAAAGCTTTCTCTCCAAGAGAGCCCAGGAATAGTTCCTGCAGGTCGACTTCCAAGATACAAAGAAGTGATACTATTGAATGATTTGATTGACTGTGCTCGCCCCGGTGAAGAGATTGAGGTCACAGGTATTTATACTAATAACTTCGACTTATCCCTAAACACAAAGAATGGATTTCCAGTGTTTGCCACTGTTGTTGAGGCAAATTATGTTACGAAGAAGCAAGACCTCTTCTCTTCCTACAAACTTACCCAGGAAGACAAAGAAGAGATTCAAAACCTGGGCAAAGACCCCCGAATTGGAGAAAGGATTATCAAGTCTATTGCTCCATCAATCTATGGTCATGAGGACATAAAAACTGCAATAGCTTTAGCTATGTTTGGAGGTCAAGAAAAAAATGTTAAAGGAAAGCATCGACTGCGTGGAGACATAAATGTTCTTCTTCTCGGTGATCCAGGAACAGCAAAATCTCAATTTCTTAAGTACGTTGAAAAAACGGGGCAGAGAGCTGTATACACTACCGGCAAAGGGGCTTCTGCTGTGGGTCTCACAGCTGCAGTTCACAAGGATCCAATAACAAGGGAGTGGACTCTTGAGGGGGGAGCCCTTGTTCTAGCTGATAAAGGAATTTGTCTTATTGATGAGTTTGACAAGATGAATGACCAGGATAGGGTAAGTATCCATGAAGCCATGGAGCAGCAGAGCATAAGCATATCAAAAGCGGGAATCGTCACATCTCTTCAGGCACGCTGCTCCGTCATTGCTGCCGCAAATCCAATTGGAGGAAGATACGATTCCTCGAAAACATTCTCTCAAAATGTTGAATTGACGGATCCTATTGTTTCTCGTTTTGACATCCTCTGCGTTGTGAAGGATGTGGTTGATCCGGTCACTGATGAAATGCTTGCAAAGTTTGTAGTTGACAGCCACTTCAAGTCACAACCCAAGGGCGCTAACAAAGATGATAAGTCCTTGAGCGAGTCCCAAGATGTTTATGCAACTGGCATGCCAGCTGATCCCGAGATACTTCCTCAAGATCTGCTGAAGAAGTACATTACATATGCCAAGTTGAATGTTTTTCCAAGGTTACATGAAGCCGATATGGATAAACTGACCCATGTATATGCTGAACTGCGGAGGGAATCTTCACACGGACAAGGAGTCCCCATTGCCGTAAGACACATTGAATCAATGATAAGAATGTCTGAAGCCCATGCGAGAATGCATCTCAGACAGCATGTTACACAAGAGGATGTGGACATGGCAATTCGTGTTCTACTTGATTCATTCATTTCAACCCAAAAATTTGGGGTGCAGAAAGCTCTGCAAAAGAGCTTTAGAAAGTATATGACTTTCAAGAAGGACTATAATGAATTGGTACTATATCTTCTACGGGAGCTTGTAAAGAATGCTTTGCATTTCGAAGAAATTGTCGCTGGATCTGCTTCAGGGTTAACGCATGTTGATGTCAAATTAGAGGATCTCTACAATAAGGCTCGAGAGCATGAAATTTATGATCTGAAACCCTTCTTCAGCAGCAGTCACTTTTCAAGGGCCAAATTTGTGTTGGATGAAAAGCGAGAAGTGATCAGACATCAACTTGCTAGATGA | 2823 | 0.4357 | MESGNPSSTPDPDPSSPTSPSANFNTDQLPHTHTSRASEDDEASVDPEVIRDEPEEEQPNEEEEDGEDLYNDNFMDDYRRMDEADQFESVGLDDTLEDDRDFDQIMEDRRAAENELDAREGRISNRNKLPQLLHDQDTDDDSYRPSKRARARPPIPSDDDVDGMPSSPGRSQGGHSREDVPMTDPTEDDPDDDGYDDEGEYEMYRVQGTLREWVTRDEVRRFIARKFKDFLLTYVNPKNEPGDFEYVRLINEMVSANKCSLEIDYKQFIYVHPNIAIWLADAPQSVLEVMEDVAKNVVFQLHPNYRNIHQKIYVRTTNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCSKCGAILGPFFQSSYSEVRVGSCPECQSKGPFTVNIEQTIYRNFQKLSLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFATVVEANYVTKKQDLFSSYKLTQEDKEEIQNLGKDPRIGERIIKSIAPSIYGHEDIKTAIALAMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPITREWTLEGGALVLADKGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFSQNVELTDPIVSRFDILCVVKDVVDPVTDEMLAKFVVDSHFKSQPKGANKDDKSLSESQDVYATGMPADPEILPQDLLKKYITYAKLNVFPRLHEADMDKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNELVLYLLRELVKNALHFEEIVAGSASGLTHVDVKLEDLYNKAREHEIYDLKPFFSSSHFSRAKFVLDEKREVIRHQLAR | 940 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi4891g00152 | 940 | MobiDBLite | consensus disorder prediction | 45 | 71 | - | - | |
| Gabi4891g00152 | 940 | ProSitePatterns | MCM family signature. | 613 | 621 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Gabi4891g00152 | 940 | MobiDBLite | consensus disorder prediction | 72 | 87 | - | - | |
| Gabi4891g00152 | 940 | Pfam | MCM N-terminal domain | 225 | 318 | IPR027925 | - | |
| Gabi4891g00152 | 940 | SUPERFAMILY | Nucleic acid-binding proteins | 226 | 473 | IPR012340 | - | |
| Gabi4891g00152 | 940 | Gene3D | - | 325 | 450 | IPR012340 | - | |
| Gabi4891g00152 | 940 | FunFam | DNA helicase | 352 | 402 | - | - | |
| Gabi4891g00152 | 940 | Gene3D | - | 352 | 402 | - | - | |
| Gabi4891g00152 | 940 | MobiDBLite | consensus disorder prediction | 184 | 198 | - | - | |
| Gabi4891g00152 | 940 | ProSiteProfiles | MCM family domain profile. | 504 | 710 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Gabi4891g00152 | 940 | Pfam | MCM AAA-lid domain | 750 | 834 | IPR041562 | - | |
| Gabi4891g00152 | 940 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 514 | 837 | IPR027417 | - | |
| Gabi4891g00152 | 940 | Pfam | Mini-chromosome maintenance protein 2 | 40 | 179 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Gabi4891g00152 | 940 | FunFam | DNA helicase | 217 | 321 | - | - | |
| Gabi4891g00152 | 940 | Pfam | MCM OB domain | 324 | 451 | IPR033762 | - | |
| Gabi4891g00152 | 940 | CDD | MCM2 | 507 | 833 | - | - | |
| Gabi4891g00152 | 940 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 453 | 464 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Gabi4891g00152 | 940 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 468 | 479 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Gabi4891g00152 | 940 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 357 | 369 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Gabi4891g00152 | 940 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 392 | 406 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Gabi4891g00152 | 940 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 334 | 351 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Gabi4891g00152 | 940 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 210 | 880 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Gabi4891g00152 | 940 | Gene3D | - | 484 | 857 | IPR027417 | - | |
| Gabi4891g00152 | 940 | MobiDBLite | consensus disorder prediction | 132 | 157 | - | - | |
| Gabi4891g00152 | 940 | MobiDBLite | consensus disorder prediction | 102 | 124 | - | - | |
| Gabi4891g00152 | 940 | MobiDBLite | consensus disorder prediction | 18 | 32 | - | - | |
| Gabi4891g00152 | 940 | Gene3D | - | 217 | 321 | - | - | |
| Gabi4891g00152 | 940 | FunFam | DNA helicase | 484 | 857 | - | - | |
| Gabi4891g00152 | 940 | MobiDBLite | consensus disorder prediction | 1 | 198 | - | - | |
| Gabi4891g00152 | 940 | Pfam | MCM P-loop domain | 492 | 714 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Gabi4891g00152 | 940 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 545 | 560 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Gabi4891g00152 | 940 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 657 | 669 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Gabi4891g00152 | 940 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 633 | 646 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Gabi4891g00152 | 940 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 605 | 619 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Gabi4891g00152 | 940 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 684 | 692 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Gabi4891g00152 | 940 | SMART | mcm | 321 | 835 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi4891g00152 | Gabi-Chr4891 | 1251438 | 1256647 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi4891g00152 | 24 | 935 | Core DNA Replication Machinery Family | AT1G44900 | 77.233 | 0.0 | 1385 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi4891g00152 | K02540 | - | gmx:100799441 | 1633.62 |