Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4891g00141 ATGTTGTTAGTGGAGACTTCTGAAGAGGGTTGTGTTGTGTGTTGTGGCCTTGTGGGTAATAAGGTAAGAATGGGAACCCCAGGAACAGAGGAGCTTCTGAAGAAGATCCAACAACTGGAGGAGGGACACGCAAACCTTAAGCGAGAAATGTCAAAGCTTAAGGTCTCCGATTGCAGAAGCAACCAGAACCACGGTCATCGCCAGAGGTCTCACTCCGTGTCTCCGCAGCGTTCAAGATTGGGGAGAACTGATGGAGCATCTGCTTGGAAGAAGGGTTCTTGTTCCTTCAAACAATCATCGCCTCTTTCAAGAGAGAGTCGCGGTGATGGAGAAGGAGAAGGCCGTTATCTGAATATTTTGCAGTCAATGGGACAGTCTGTTCATATTTTGGATCTTAGCTTTCGTATTATATACTGGAACCGTAGTGCCGAAAATTTGTATGGTTATGCAGCTGAGGAAGCTCTAGGCCAGGACGGGATGGAGCTTCTTGTAGATTCCAGGGATTTGGCCTTGGCCAATGATACAGTGAACCGTGTCATAATGGGAGAGAGCTGGACTGGGCAATTCCCGGTCAAGAATAAGATGGGAGAGAAGTTTGTAGCTGTAGCAACTAATACACCTTTCTATGATGATGATGGAAGCTTAGTTGGGATTATTTGTGTCTCAAGTGATTCGCGGTCCTTTCTTGAAATGAGAGTTCCGTTGTCAGGTGTAAAGAACTCTGAATCAAATTCAGGTTCCACCTTTCCTAGAAGTAGCATTACAAATAAACTTGGTCTTGACACTCAACAGCCACTTCAAGTTGCTCTGGCATCGAAAATTTCAAATTTGGCATCAAAGGTGAGTAGCAAAGTTATGTCAAGAATCTGGACAGGAGAAAATAATGTGAATCCTGAAGGCGGTAGAGGAGAAATTCATCATTCTGAGCATAATTTCTCAGAATCTGTTGTTTCAGACCAGAGAGAGGATGCTAATTCCAGTGGAGCTAGCACACCCAGAGGTGATGTGCTACAATCCCCTTTTGGTGTACTTTCTCATGTTGAAGAAAAATCGCAAGGAAAGACTGTGGGAGACTCTGGTGATGAGAGTGAAGGAAAACCTATTCATAAAATCATACCTTCTAAGGCTGAAGCTTGGATTCAAAAGAAAACATTATCGTGGCCATGGAGAAAAAATGATCGAGAAGGATCAGCAGCAAGCAATGTTCGTGTTGCATGGCTGTCGAGGCAGAATGATCAAGAAAATGAGTCAGTTAATGAGAATATTCTTTCCTCTGGCTTGAAGCAAGAAAGCCAGACAGTCGAAAGTAATCGCCCTATTAACAATGAGGCTTCAGGATCATGGTCCTCCTCTTTTAATGTCAACAGCACAAGTAGTGTCAGCAGCTGTGGGAGTGCTGGCAGTTGTGCTGTCAATAATAAAGTGGATGTGGACACTGATTGCTTAGATTATGAAATTTTGTGGGAGGACCTGACAATTGGAGAACAAATTGGACAAGGTTCTCGTGGAACTGTATATCATGCTCTGTGGTATGGATCAGACGTTGCCGTCAAGGTTTTCTCACAGCAAGAATATTCAGATGATGTGATACAGTCCTTCAGACAAGAGGTGTCTGTGATGAAAAGACTTCGACACCCAAATATTCTTCTTTTTATGGGGGCAGTGACTTCTCCTCAACGTCTCTGCATTGTGACAGAGTTTCTCCCACGGGGAAGCTTGTGCCGCTTGTTACACAGAAACACATCCAAACTTGATTGGAGACGGCGAGTTCATATGGCCTTGGATATTGCACGAGGCGTAAATTATCTTCATCATTGTAACCCGCCTATCATCCACAGAGATTTGAAGTCTTCAAATATTCTAGTTGATAAAAATTGGACTGTGAAGGTTGGTGATTTTGGTCTTTCACGTCTTAAGCTAGAAACATATCTCACAACTAAAGGGAGGGGCACGCCTCAATGGATGGCACCAGAAGTTCTTCGTAATGAACCCTCAGACGAGAAGTCTGACGTATACGGCTTTGGGGTGATATTATGGGAACTTGCAACTGAAAAGATCCCTTGGGATAATCTCAACTCAATGCAGGTGATTGGAGCTGTAGGGTTCATGAACCAGCGGTTAGAAATCCCAAAACATATTGATCCACGGTGGGCTTCTATAATTGAGAGCTGCTGGCATAGTGATCCAACTTGCCGACCAACATTTCGGGAACTTCTTGAAAGGCTTAGAGAGCTGCAAAAGCAGTATGCCATTCAGTTCCAGGCAGCCCGATCCGCAGGTGGGGAAAGCGCCCAAAAGGAGTCCTAG 2307 0.4443 MLLVETSEEGCVVCCGLVGNKVRMGTPGTEELLKKIQQLEEGHANLKREMSKLKVSDCRSNQNHGHRQRSHSVSPQRSRLGRTDGASAWKKGSCSFKQSSPLSRESRGDGEGEGRYLNILQSMGQSVHILDLSFRIIYWNRSAENLYGYAAEEALGQDGMELLVDSRDLALANDTVNRVIMGESWTGQFPVKNKMGEKFVAVATNTPFYDDDGSLVGIICVSSDSRSFLEMRVPLSGVKNSESNSGSTFPRSSITNKLGLDTQQPLQVALASKISNLASKVSSKVMSRIWTGENNVNPEGGRGEIHHSEHNFSESVVSDQREDANSSGASTPRGDVLQSPFGVLSHVEEKSQGKTVGDSGDESEGKPIHKIIPSKAEAWIQKKTLSWPWRKNDREGSAASNVRVAWLSRQNDQENESVNENILSSGLKQESQTVESNRPINNEASGSWSSSFNVNSTSSVSSCGSAGSCAVNNKVDVDTDCLDYEILWEDLTIGEQIGQGSRGTVYHALWYGSDVAVKVFSQQEYSDDVIQSFRQEVSVMKRLRHPNILLFMGAVTSPQRLCIVTEFLPRGSLCRLLHRNTSKLDWRRRVHMALDIARGVNYLHHCNPPIIHRDLKSSNILVDKNWTVKVGDFGLSRLKLETYLTTKGRGTPQWMAPEVLRNEPSDEKSDVYGFGVILWELATEKIPWDNLNSMQVIGAVGFMNQRLEIPKHIDPRWASIIESCWHSDPTCRPTFRELLERLRELQKQYAIQFQAARSAGGESAQKES 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4891g00141 768 ProSiteProfiles PAS repeat profile. 112 183 IPR000014 -
Gabi4891g00141 768 FunFam PAS domain-containing protein tyrosine kinase 484 568 - -
Gabi4891g00141 768 PRINTS Tyrosine kinase catalytic domain signature 565 578 IPR001245 GO:0004672|GO:0006468
Gabi4891g00141 768 PRINTS Tyrosine kinase catalytic domain signature 604 622 IPR001245 GO:0004672|GO:0006468
Gabi4891g00141 768 PRINTS Tyrosine kinase catalytic domain signature 650 660 IPR001245 GO:0004672|GO:0006468
Gabi4891g00141 768 PRINTS Tyrosine kinase catalytic domain signature 669 691 IPR001245 GO:0004672|GO:0006468
Gabi4891g00141 768 PRINTS Tyrosine kinase catalytic domain signature 713 735 IPR001245 GO:0004672|GO:0006468
Gabi4891g00141 768 CDD STKc_MAP3K-like 497 735 - -
Gabi4891g00141 768 MobiDBLite consensus disorder prediction 351 370 - -
Gabi4891g00141 768 SMART pas_2 114 181 IPR000014 -
Gabi4891g00141 768 SUPERFAMILY PYP-like sensor domain (PAS domain) 118 221 IPR035965 -
Gabi4891g00141 768 Pfam PAS fold 115 222 IPR013767 GO:0006355
Gabi4891g00141 768 SUPERFAMILY Protein kinase-like (PK-like) 480 742 IPR011009 -
Gabi4891g00141 768 Coils Coil 29 56 - -
Gabi4891g00141 768 CDD PAS 123 224 IPR000014 -
Gabi4891g00141 768 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 208 748 - -
Gabi4891g00141 768 MobiDBLite consensus disorder prediction 313 370 - -
Gabi4891g00141 768 Gene3D PAS domain 124 228 - -
Gabi4891g00141 768 SMART serkin_6 491 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4891g00141 768 MobiDBLite consensus disorder prediction 55 111 - -
Gabi4891g00141 768 Gene3D Phosphorylase Kinase; domain 1 484 568 - -
Gabi4891g00141 768 FunFam PAS domain-containing protein tyrosine kinase family protein 569 759 - -
Gabi4891g00141 768 Pfam Protein tyrosine and serine/threonine kinase 491 742 IPR001245 GO:0004672|GO:0006468
Gabi4891g00141 768 Gene3D Transferase(Phosphotransferase) domain 1 569 768 - -
Gabi4891g00141 768 ProSitePatterns Serine/Threonine protein kinases active-site signature. 610 622 IPR008271 GO:0004672|GO:0006468
Gabi4891g00141 768 ProSiteProfiles Protein kinase domain profile. 491 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4891g00141 768 NCBIfam PAS domain S-box protein 113 224 IPR000014 -
Gabi4891g00141 768 MobiDBLite consensus disorder prediction 318 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4891g00141 Gabi-Chr4891 1143938 1152100 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4891g00141 24 759 MAP Kinase Kinase Kinase AT3G06620 60.571 0.0 910
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Gabi4891g00141 PK_Tyr_Ser-Thr 1.3e-67 CL0016