Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4891g00140 ATGTTGTTAGTGGAGACTTCTGAAGAGGGTTGTGTTGTGTGTTGTGGCCTTGTGGGTAATAAGGTAAGAATGGGAACCCCAGGAACAGAGGAGCTTCTGAAGAAGATCCAACAACTGGAGGAGGGACACGCAAACCTTAAGCGAGAAATGTCAAAGCTTAAGGTCTCCGATTGCAGAAGCAACCAGAACCACGGTCATCGCCAGAGGTCTCACTCCGTGTCTCCGCAGCGTTCAAGATTGGGGAGAACTGATGGAGCATCTGCTTGGAAGAAGGGTTCTTGTTCCTTCAAACAATCATCGCCTCTTTCAAGAGAGAGTCGCGGTGATGGAGAAGGAGAAGGCCGTGCACGCTGTGGACCTTCCGCTGTGAACTTCACTGAACGCCAGTATCTGAATATTTTGCAGTCAATGGGACAGTCTGTTCATATTTTGGATCTTAGCTTTCGTATTATATACTGGAACCGTAGTGCCGAAAATTTGTATGGTTATGCAGCTGAGGAAGCTCTAGGCCAGGACGGGATGGAGCTTCTTGTAGATTCCAGGGATTTGGCCTTGGCCAATGATACAGTGAACCGTGTCATAATGGGAGAGAGCTGGACTGGGCAATTCCCGGTCAAGAATAAGATGGGAGAGAAGTTTGTAGCTGTAGCAACTAATACACCTTTCTATGATGATGATGGAAGCTTAGTTGGGATTATTTGTGTCTCAAGTGATTCGCGGTCCTTTCTTGAAATGAGAGTTCCGTTGTCAGGTGTAAAGAACTCTGAATCAAATTCAGGTTCCACCTTTCCTAGAAGTAGCATTACAAATAAACTTGGTCTTGACACTCAACAGCCACTTCAAGTTGCTCTGGCATCGAAAATTTCAAATTTGGCATCAAAGGTGAGTAGCAAAGTTATGTCAAGAATCTGGACAGGAGAAAATAATGTGAATCCTGAAGGCGGTAGAGGAGAAATTCATCATTCTGAGCATAATTTCTCAGAATCTGTTGTTTCAGACCAGAGAGAGGATGCTAATTCCAGTGGAGCTAGCACACCCAGAGGTGATGTGCTACAATCCCCTTTTGGTGTACTTTCTCATGTTGAAGAAAAATCGCAAGGAAAGACTGTGGGAGACTCTGGTGATGAGAGTGAAGGAAAACCTATTCATAAAATCATACCTTCTAAGGCTGAAGCTTGGATTCAAAAGAAAACATTATCGTGGCCATGGAGAAAAAATGATCGAGAAGGATCAGCAGCAAGCAATGTTCGTGTTGCATGGCTGTCGAGGCAGAATGATCAAGAAAATGAGTCAGTTAATGAGAATATTCTTTCCTCTGGCTTGAAGCAAGAAAGCCAGACAGTCGAAAGTAATCGCCCTATTAACAATGAGGCTTCAGGATCATGGTCCTCCTCTTTTAATGTCAACAGCACAAGTAGTGTCAGCAGCTGTGGGAGTGCTGGCAGTTGTGCTGTCAATAATAAAGTGGATGTGGACACTGATTGCTTAGATTATGAAATTTTGTGGGAGGACCTGACAATTGGAGAACAAATTGGACAAGGTTCTCGTGGAACTGTATATCATGCTCTGTGGTATGGATCAGACGTTGCCGTCAAGGTTTTCTCACAGCAAGAATATTCAGATGATGTGATACAGTCCTTCAGACAAGAGGTGTCTGTGATGAAAAGACTTCGACACCCAAATATTCTTCTTTTTATGGGGGCAGTGACTTCTCCTCAACGTCTCTGCATTGTGACAGAGTTTCTCCCACGGGGAAGCTTGTGCCGCTTGTTACACAGAAACACATCCAAACTTGATTGGAGACGGCGAGTTCATATGGCCTTGGATATTGCACGAGGCGTAAATTATCTTCATCATTGTAACCCGCCTATCATCCACAGAGATTTGAAGTCTTCAAATATTCTAGTTGATAAAAATTGGACTGTGAAGGTTGGTGATTTTGGTCTTTCACGTCTTAAGCTAGAAACATATCTCACAACTAAAGGGAGGGGCACGCCTCAATGGATGGCACCAGAAGTTCTTCGTAATGAACCCTCAGACGAGAAGTCTGACGTATACGGCTTTGGGGTGATATTATGGGAACTTGCAACTGAAAAGATCCCTTGGGATAATCTCAACTCAATGCAGGTGATTGGAGCTGTAGGGTTCATGAACCAGCGGTTAGAAATCCCAAAACATATTGATCCACGGTGGGCTTCTATAATTGAGAGCTGCTGGCATAGTGATCCAACTTGCCGACCAACATTTCGGGAACTTCTTGAAAGGCTTAGAGAGCTGCAAAAGCAGTATGCCATTCAGTTCCAGGCAGCCCGATCCGCAGGTGGGGAAAGCGCCCAAAAGGAGTCCTAG 2349 0.447 MLLVETSEEGCVVCCGLVGNKVRMGTPGTEELLKKIQQLEEGHANLKREMSKLKVSDCRSNQNHGHRQRSHSVSPQRSRLGRTDGASAWKKGSCSFKQSSPLSRESRGDGEGEGRARCGPSAVNFTERQYLNILQSMGQSVHILDLSFRIIYWNRSAENLYGYAAEEALGQDGMELLVDSRDLALANDTVNRVIMGESWTGQFPVKNKMGEKFVAVATNTPFYDDDGSLVGIICVSSDSRSFLEMRVPLSGVKNSESNSGSTFPRSSITNKLGLDTQQPLQVALASKISNLASKVSSKVMSRIWTGENNVNPEGGRGEIHHSEHNFSESVVSDQREDANSSGASTPRGDVLQSPFGVLSHVEEKSQGKTVGDSGDESEGKPIHKIIPSKAEAWIQKKTLSWPWRKNDREGSAASNVRVAWLSRQNDQENESVNENILSSGLKQESQTVESNRPINNEASGSWSSSFNVNSTSSVSSCGSAGSCAVNNKVDVDTDCLDYEILWEDLTIGEQIGQGSRGTVYHALWYGSDVAVKVFSQQEYSDDVIQSFRQEVSVMKRLRHPNILLFMGAVTSPQRLCIVTEFLPRGSLCRLLHRNTSKLDWRRRVHMALDIARGVNYLHHCNPPIIHRDLKSSNILVDKNWTVKVGDFGLSRLKLETYLTTKGRGTPQWMAPEVLRNEPSDEKSDVYGFGVILWELATEKIPWDNLNSMQVIGAVGFMNQRLEIPKHIDPRWASIIESCWHSDPTCRPTFRELLERLRELQKQYAIQFQAARSAGGESAQKES 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4891g00140 782 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 137 762 - -
Gabi4891g00140 782 MobiDBLite consensus disorder prediction 332 348 - -
Gabi4891g00140 782 FunFam PAS domain-containing protein tyrosine kinase family protein 583 773 - -
Gabi4891g00140 782 MobiDBLite consensus disorder prediction 327 384 - -
Gabi4891g00140 782 Gene3D Transferase(Phosphotransferase) domain 1 583 782 - -
Gabi4891g00140 782 PRINTS Tyrosine kinase catalytic domain signature 579 592 IPR001245 GO:0004672|GO:0006468
Gabi4891g00140 782 PRINTS Tyrosine kinase catalytic domain signature 664 674 IPR001245 GO:0004672|GO:0006468
Gabi4891g00140 782 PRINTS Tyrosine kinase catalytic domain signature 727 749 IPR001245 GO:0004672|GO:0006468
Gabi4891g00140 782 PRINTS Tyrosine kinase catalytic domain signature 683 705 IPR001245 GO:0004672|GO:0006468
Gabi4891g00140 782 PRINTS Tyrosine kinase catalytic domain signature 618 636 IPR001245 GO:0004672|GO:0006468
Gabi4891g00140 782 ProSiteProfiles PAS repeat profile. 126 197 IPR000014 -
Gabi4891g00140 782 ProSiteProfiles Protein kinase domain profile. 505 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4891g00140 782 SMART serkin_6 505 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4891g00140 782 Coils Coil 29 56 - -
Gabi4891g00140 782 SUPERFAMILY Protein kinase-like (PK-like) 494 756 IPR011009 -
Gabi4891g00140 782 SUPERFAMILY PYP-like sensor domain (PAS domain) 126 238 IPR035965 -
Gabi4891g00140 782 NCBIfam PAS domain S-box protein 127 238 IPR000014 -
Gabi4891g00140 782 CDD STKc_MAP3K-like 511 749 - -
Gabi4891g00140 782 Gene3D PAS domain 138 242 - -
Gabi4891g00140 782 Pfam PAS fold 129 236 IPR013767 GO:0006355
Gabi4891g00140 782 FunFam PAS domain-containing protein tyrosine kinase 498 582 - -
Gabi4891g00140 782 MobiDBLite consensus disorder prediction 55 119 - -
Gabi4891g00140 782 Pfam Protein tyrosine and serine/threonine kinase 505 756 IPR001245 GO:0004672|GO:0006468
Gabi4891g00140 782 CDD PAS 137 238 IPR000014 -
Gabi4891g00140 782 SMART pas_2 128 195 IPR000014 -
Gabi4891g00140 782 MobiDBLite consensus disorder prediction 365 384 - -
Gabi4891g00140 782 Gene3D Phosphorylase Kinase; domain 1 498 582 - -
Gabi4891g00140 782 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4891g00140 Gabi-Chr4891 1143938 1152100 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4891g00140 24 773 MAP Kinase Kinase Kinase AT3G06620 61.219 0.0 927
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Gabi4891g00140 PK_Tyr_Ser-Thr 1.4e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4891g00140 - - gmx:100800867 1211.44