Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4891g00113 ATGATGGCGAATAACTTAGCGGGGCAGCTCGTGGGCTCAGGCATACATGGATTCCACACATTGCAAGAGCTGGATATGGGAAGCATTAGGGAGGAAGCAAGAACCAGATGGCTTCGTCCCAATGAGATTCATGCCATACTTTGTAATTCCAAGTATTTCACCATCAATGTCAAACCAGTTAATCTGCCCAAAAGTGGTACTATTGTATTATTTGACCGCAAAATGCTTAGGAACTTTCGAAAAGATGGGCACAACTGGAAGAAGAAAAAGGATGGGAAAACTGTTAAAGAAGCTCATGAGCACTTAAAAGTTGGCAATGAAGAAAGGATCCACGTATATTATGCACATGGCCAAGATAACCCAAACTTTGTTCGTAGATGTTATTGGCTGCTTGATAAGAGTCTGGAACACATAGTCCTTGTTCATTACCGTGAAACACAGGAGTTGCAAGGTTCTCCTGTCACTCCCGTAAATTCAAACTCTAGTTCTACCTCTGATCCAACTGTACCATGGATTTTATCAGAAGAGATAGATTCAGGGACTGCAACTCCATATGCCAGTGTTAAAAGTCATGAACTGAGGCTCCATGAGATTAATACACTTGAATGGGATGACCTAGTGGTTGCAAATGATCTCAACACGTCGACTGTGCCTAATGAAGGCAAAGGTCCGTATTTTGATCAACAAAATCAATTTTTACTGAATGACAGTTTCAACAACGTAACCAGCAATCCATCTGCAGGAATTCCTTCTTTTGATAGTTTAACTCAGCCAATTGCTGGGAGCAATAGTGTTCCTTACAATTTTTCAGAAAGGGTTAATCTTGAGAAAATGGACAATCAAGTAAATTCAAATGAGCAGAGGAATCATCCTGTTTCTGTAAGTGGTGTTGATTCCTTAGACACTTCGGTCAATGGGGGATTGCAAAGTCAGGACAGCTTTGGAATGTGGGTGAACCACATCATGTCTGATTCACCATGTTCATTGGGTGAATCAGCTCTTGAATCCTCAGTTTCATCCATGCATGAACCATATTCATCTGTGGTAGTGGATAATCAGCAACTTTCTCTGCCGGAACAAGTATTCAATATCACTGATGTGTCCCATGCATGGGTGTCTTCTACCGAGAAATCAAAGGTCCTGGTGACTGGATTCTTTCATAAGGACTATCTGCACCTTTCAAAGTCCAATCTATTGTGTGTCTGTGGTGATGTTAGTGTTCCTGCAGAAATCATTCAGGTTGGCGTCTATCGATGCTGGTTATCACCACATTCTCCTGGACTTGTGAATCTCTACTTGAGCTTTGATGGCCATAAGCCTATTAGCCAAGTTGTTAATTTTGAGTATCGTACTCCTGTTTTGCATGATCCTGCAGCTTCTATGGAAGAGAAGGACAACTGGGATGAATTTCGACTTCAAATGAGGCTTGCTTATTTGCTCTTTGCTAAACAACAAAGCCTTGATGTTTTCTCTTGTAAAATATCACCTAATGGACTGAAGGAGGCAAGGAAATTCGCCTCCAAAACATCATTTATTTCCAGTAGTTGGCAATACTTAATCAATTCAACTGAAGACAACAAAATTCCATTTTCACAAGCAAAAGATGCCCTATTTGAAATTGCATTGAAAAACAGACTAAAGGAATGGCTTTTGGAAAGAATTGGTTTAGGCTGTAAGACTACTGAATATGATGCGCAAGGCCAAAGTGTAATCCATTTGTGTGCTATTTTGGGATATACTTGGGCTGTTTCCCTATTTTCATGGTCAGGCCTATCACTGGATTTCCGCGATAAATTTGGATGGACAGCTCTTCATTGGGCAGCATATTGTGGAAGGGAGAAAATGGTTGCAACTCTGTTGTCTGCTGGGGCAAAGCCAAATTTGGTCACTGATCCAACTCCACAAAATCCTGGTGGATGTACTGCTGCTGATGTTGCTTATATGAGGGGTTATGATGGCTTAGCAGCTTATCTTTCAGAAAAGTCTCTGGTTGAGCAGTTCAATGACATGAGCTTAGCTGGAAATATCAGTGGCTCACTGCAAACTAGCGCGACTGATCCTGTAAATTCTGAGAACCTTAGTGAGGACCAGCTGTACCTGAAGGATACGTTGGCAGCTTACCGAACAGCTGCTGAGGCAGCAGCACGCATACAAGCTGCATTTAGGGAGCACTCCCTAAAATTGCAAACTCAGGCAGTTGAGTTTTCCAGTCCAGAGGCTGAAGCACGCAAAATAGTTGCAGCAATGAAGATTCAACATGCCTTTAGGAACTTTGAGACAAGGAAAATGATGAAAGCTGCCGCTCGCATTCAGCATAGATTCCGTACATGGAAGATTCGTAGAGAATTTCTCAACATGCGCCGTCAGGCTATTAAAATTCAAGCTGCTTTTCGGTGCTTCCAAGTGCGGAAGCATTATCGAAAAATTCTTTGGTCTGTTAGTGTGGTTGAGAAAGCAGTGCTGCGTTGGCGTTTGAAGAGAAGGGGCTTCCGTGGGCTGCGGGTTAATACTGTTGAAGAAGCAATGGGAGACCAGAATCAGCAAAGTGACACGGAGGAGGAATTCTTTCGGACTGGTAGGAAACAAGCTGAAGAACGTGTTGAGAGATCTGTAGTACGTGTGCAGGCTATGTTCCGTTCTAAGAAAGCACAAGAAGAGTACAGGAGGATGAAGTTGGCTCTTAAACAAGCAAAGATGGAAAGGGAATATGAACAACTCCTCAGTACTGAAGTTGACATGGAACTGAAGACATAG 2754 0.4245 MMANNLAGQLVGSGIHGFHTLQELDMGSIREEARTRWLRPNEIHAILCNSKYFTINVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPNFVRRCYWLLDKSLEHIVLVHYRETQELQGSPVTPVNSNSSSTSDPTVPWILSEEIDSGTATPYASVKSHELRLHEINTLEWDDLVVANDLNTSTVPNEGKGPYFDQQNQFLLNDSFNNVTSNPSAGIPSFDSLTQPIAGSNSVPYNFSERVNLEKMDNQVNSNEQRNHPVSVSGVDSLDTSVNGGLQSQDSFGMWVNHIMSDSPCSLGESALESSVSSMHEPYSSVVVDNQQLSLPEQVFNITDVSHAWVSSTEKSKVLVTGFFHKDYLHLSKSNLLCVCGDVSVPAEIIQVGVYRCWLSPHSPGLVNLYLSFDGHKPISQVVNFEYRTPVLHDPAASMEEKDNWDEFRLQMRLAYLLFAKQQSLDVFSCKISPNGLKEARKFASKTSFISSSWQYLINSTEDNKIPFSQAKDALFEIALKNRLKEWLLERIGLGCKTTEYDAQGQSVIHLCAILGYTWAVSLFSWSGLSLDFRDKFGWTALHWAAYCGREKMVATLLSAGAKPNLVTDPTPQNPGGCTAADVAYMRGYDGLAAYLSEKSLVEQFNDMSLAGNISGSLQTSATDPVNSENLSEDQLYLKDTLAAYRTAAEAAARIQAAFREHSLKLQTQAVEFSSPEAEARKIVAAMKIQHAFRNFETRKMMKAAARIQHRFRTWKIRREFLNMRRQAIKIQAAFRCFQVRKHYRKILWSVSVVEKAVLRWRLKRRGFRGLRVNTVEEAMGDQNQQSDTEEEFFRTGRKQAEERVERSVVRVQAMFRSKKAQEEYRRMKLALKQAKMEREYEQLLSTEVDMELKT 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4891g00113 917 ProSiteProfiles CG-1 DNA-binding domain profile. 26 152 IPR005559 GO:0003677
Gabi4891g00113 917 SMART ANK_2a 638 669 IPR002110 GO:0005515
Gabi4891g00113 917 SMART ANK_2a 599 628 IPR002110 GO:0005515
Gabi4891g00113 917 ProSiteProfiles Ankyrin repeat region circular profile. 599 627 - -
Gabi4891g00113 917 Gene3D - 524 668 IPR036770 -
Gabi4891g00113 917 Gene3D - 762 810 - -
Gabi4891g00113 917 Coils Coil 880 900 - -
Gabi4891g00113 917 SUPERFAMILY Ankyrin repeat 538 661 IPR036770 -
Gabi4891g00113 917 ProSiteProfiles IQ motif profile. 786 814 IPR000048 GO:0005515
Gabi4891g00113 917 SMART CG_1_2 29 147 IPR005559 GO:0003677
Gabi4891g00113 917 SMART iq_5 709 731 IPR000048 GO:0005515
Gabi4891g00113 917 SMART iq_5 785 807 IPR000048 GO:0005515
Gabi4891g00113 917 SMART iq_5 866 888 IPR000048 GO:0005515
Gabi4891g00113 917 SMART iq_5 762 784 IPR000048 GO:0005515
Gabi4891g00113 917 ProSiteProfiles IQ motif profile. 747 773 IPR000048 GO:0005515
Gabi4891g00113 917 FunFam Calmodulin-binding transcription activator 5 358 454 - -
Gabi4891g00113 917 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 25 896 - -
Gabi4891g00113 917 ProSiteProfiles IQ motif profile. 868 896 IPR000048 GO:0005515
Gabi4891g00113 917 SUPERFAMILY E set domains 363 450 IPR014756 -
Gabi4891g00113 917 Gene3D Immunoglobulins 358 453 IPR013783 -
Gabi4891g00113 917 Pfam CG-1 domain 32 145 IPR005559 GO:0003677
Gabi4891g00113 917 Pfam Ankyrin repeats (3 copies) 546 628 IPR002110 GO:0005515
Gabi4891g00113 917 ProSiteProfiles Ankyrin repeat profile. 599 631 IPR002110 GO:0005515
Gabi4891g00113 917 FunFam calmodulin-binding transcription activator 5 529 669 - -
Gabi4891g00113 917 Pfam IQ calmodulin-binding motif 788 807 IPR000048 GO:0005515
Gabi4891g00113 917 ProSiteProfiles IQ motif profile. 763 792 IPR000048 GO:0005515
Gabi4891g00113 917 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 710 814 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4891g00113 Gabi-Chr4891 972212 982692 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4891g00113 31 900 CAMTA Transcription Factor Family AT3G16940 56.800 0.0 964
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Gabi4891g00113 CG-1 1.5e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4891g00113 K21596 - gmx:100793970 1537.7