Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4891g00112 ATGATGGCGAATAACTTAGCGGGGCAGCTCGTGGGCTCAGGCATACATGGATTCCACACATTGCAAGAGCTGGATATGGGAAGCATTAGGGAGGAAGCAAGAACCAGATGGCTTCGTCCCAATGAGATTCATGCCATACTTTGTAATTCCAAGTATTTCACCATCAATGTCAAACCAGTTAATCTGCCCAAAAGTGGTACTATTGTATTATTTGACCGCAAAATGCTTAGGAACTTTCGAAAAGATGGGCACAACTGGAAGAAGAAAAAGGATGGGAAAACTGTTAAAGAAGCTCATGAGCACTTAAAAGTTGGCAATGAAGAAAGGATCCACGTATATTATGCACATGGCCAAGATAACCCAAACTTTGTTCGTAGATGTTATTGGCTGCTTGATAAGAGTCTGGAACACATAGTCCTTGTTCATTACCGTGAAACACAGGAGTTGCAAGGTTCTCCTGTCACTCCCGTAAATTCAAACTCTAGTTCTACCTCTGATCCAACTGTACCATGGATTTTATCAGAAGAGATAGATTCAGGGACTGCAACTCCATATGCCAGTGAGATTAATGACAATGTAACAGTTAAAAGTCATGAACTGAGGCTCCATGAGATTAATACACTTGAATGGGATGACCTAGTGGTTGCAAATGATCTCAACACGTCGACTGTGCCTAATGAAGGCAAAGGTCCGTATTTTGATCAACAAAATCAATTTTTACTGAATGACAGTTTCAACAACGTAACCAGCAATCCATCTGCAGGAATTCCTTCTTTTGATAGTTTAACTCAGCCAATTGCTGGGAGCAATAGTGTTCCTTACAATTTTTCAGAAAGGGTTAATCTTGAGAAAATGGACAATCAAGTAAATTCAAATGAGCAGAGGAATCATCCTGTTTCTGTAAGTGGTGTTGATTCCTTAGACACTTCGGTCAATGGGGGATTGCAAAGTCAGGACAGCTTTGGAATGTGGGTGAACCACATCATGTCTGATTCACCATGTTCATTGGGTGAATCAGCTCTTGAATCCTCAGTTTCATCCATGCATGAACCATATTCATCTGTGGTAGTGGATAATCAGCAACTTTCTCTGCCGGAACAAGTATTCAATATCACTGATGTGTCCCATGCATGGGTGTCTTCTACCGAGAAATCAAAGGTCCTGGTGACTGGATTCTTTCATAAGGACTATCTGCACCTTTCAAAGTCCAATCTATTGTGTGTCTGTGGTGATGTTAGTGTTCCTGCAGAAATCATTCAGGTTGGCGTCTATCGATGCTGGTTATCACCACATTCTCCTGGACTTGTGAATCTCTACTTGAGCTTTGATGGCCATAAGCCTATTAGCCAAGTTGTTAATTTTGAGTATCGTACTCCTGTTTTGCATGATCCTGCAGCTTCTATGGAAGAGAAGGACAACTGGGATGAATTTCGACTTCAAATGAGGCTTGCTTATTTGCTCTTTGCTAAACAACAAAGCCTTGATGTTTTCTCTTGTAAAATATCACCTAATGGACTGAAGGAGGCAAGGAAATTCGCCTCCAAAACATCATTTATTTCCAGTAGTTGGCAATACTTAATCAATTCAACTGAAGACAACAAAATTCCATTTTCACAAGCAAAAGATGCCCTATTTGAAATTGCATTGAAAAACAGACTAAAGGAATGGCTTTTGGAAAGAATTGGTTTAGGCTGTAAGACTACTGAATATGATGCGCAAGGCCAAAGTGTAATCCATTTGTGTGCTATTTTGGGATATACTTGGGCTGTTTCCCTATTTTCATGGTCAGGCCTATCACTGGATTTCCGCGATAAATTTGGATGGACAGCTCTTCATTGGGCAGCATATTGTGGAAGGGAGAAAATGGTTGCAACTCTGTTGTCTGCTGGGGCAAAGCCAAATTTGGTCACTGATCCAACTCCACAAAATCCTGGTGGATGTACTGCTGCTGATGTTGCTTATATGAGGGGTTATGATGGCTTAGCAGCTTATCTTTCAGAAAAGTCTCTGGTTGAGCAGTTCAATGACATGAGCTTAGCTGGAAATATCAGTGGCTCACTGCAAACTAGCGCGACTGATCCTGTAAATTCTGAGAACCTTAGTGAGGACCAGCTGTACCTGAAGGATACGTTGGCAGCTTACCGAACAGCTGCTGAGGCAGCAGCACGCATACAAGCTGCATTTAGGGAGCACTCCCTAAAATTGCAAACTCAGGCAGTTGAGTTTTCCAGTCCAGAGGCTGAAGCACGCAAAATAGTTGCAGCAATGAAGATTCAACATGCCTTTAGGAACTTTGAGACAAGGAAAATGATGAAAGCTGCCGCTCGCATTCAGCATAGATTCCGTACATGGAAGATTCGTAGAGAATTTCTCAACATGCGCCGTCAGGCTATTAAAATTCAAGCTGCTTTTCGGTGCTTCCAAGTGCGGAAGCATTATCGAAAAATTCTTTGGTCTGTTAGTGTGGTTGAGAAAGCAGTGCTGCGTTGGCGTTTGAAGAGAAGGGGCTTCCGTGGGCTGCGGGTTAATACTGTTGAAGAAGCAATGGGAGACCAGAATCAGCAAAGTGACACGGAGGAGGAATTCTTTCGGACTGGTAGGAAACAAGCTGAAGAACGTGTTGAGAGATCTGTAGTACGTGTGCAGGCTATGTTCCGTTCTAAGAAAGCACAAGAAGAGTACAGGAGGATGAAGTTGGCTCTTAAACAAGCAAAGATGGAAAGGGAATATGAACAACTCCTCAGTACTGAAGTTGACATGGAACTGAAGACATAG 2775 0.4234 MMANNLAGQLVGSGIHGFHTLQELDMGSIREEARTRWLRPNEIHAILCNSKYFTINVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPNFVRRCYWLLDKSLEHIVLVHYRETQELQGSPVTPVNSNSSSTSDPTVPWILSEEIDSGTATPYASEINDNVTVKSHELRLHEINTLEWDDLVVANDLNTSTVPNEGKGPYFDQQNQFLLNDSFNNVTSNPSAGIPSFDSLTQPIAGSNSVPYNFSERVNLEKMDNQVNSNEQRNHPVSVSGVDSLDTSVNGGLQSQDSFGMWVNHIMSDSPCSLGESALESSVSSMHEPYSSVVVDNQQLSLPEQVFNITDVSHAWVSSTEKSKVLVTGFFHKDYLHLSKSNLLCVCGDVSVPAEIIQVGVYRCWLSPHSPGLVNLYLSFDGHKPISQVVNFEYRTPVLHDPAASMEEKDNWDEFRLQMRLAYLLFAKQQSLDVFSCKISPNGLKEARKFASKTSFISSSWQYLINSTEDNKIPFSQAKDALFEIALKNRLKEWLLERIGLGCKTTEYDAQGQSVIHLCAILGYTWAVSLFSWSGLSLDFRDKFGWTALHWAAYCGREKMVATLLSAGAKPNLVTDPTPQNPGGCTAADVAYMRGYDGLAAYLSEKSLVEQFNDMSLAGNISGSLQTSATDPVNSENLSEDQLYLKDTLAAYRTAAEAAARIQAAFREHSLKLQTQAVEFSSPEAEARKIVAAMKIQHAFRNFETRKMMKAAARIQHRFRTWKIRREFLNMRRQAIKIQAAFRCFQVRKHYRKILWSVSVVEKAVLRWRLKRRGFRGLRVNTVEEAMGDQNQQSDTEEEFFRTGRKQAEERVERSVVRVQAMFRSKKAQEEYRRMKLALKQAKMEREYEQLLSTEVDMELKT 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4891g00112 924 ProSiteProfiles CG-1 DNA-binding domain profile. 26 152 IPR005559 GO:0003677
Gabi4891g00112 924 ProSiteProfiles Ankyrin repeat profile. 606 638 IPR002110 GO:0005515
Gabi4891g00112 924 SMART iq_5 873 895 IPR000048 GO:0005515
Gabi4891g00112 924 SMART iq_5 792 814 IPR000048 GO:0005515
Gabi4891g00112 924 SMART iq_5 769 791 IPR000048 GO:0005515
Gabi4891g00112 924 SMART iq_5 716 738 IPR000048 GO:0005515
Gabi4891g00112 924 ProSiteProfiles IQ motif profile. 754 780 IPR000048 GO:0005515
Gabi4891g00112 924 SUPERFAMILY E set domains 370 457 IPR014756 -
Gabi4891g00112 924 Gene3D - 531 675 IPR036770 -
Gabi4891g00112 924 Gene3D - 769 817 - -
Gabi4891g00112 924 ProSiteProfiles Ankyrin repeat region circular profile. 606 634 - -
Gabi4891g00112 924 Pfam Ankyrin repeats (3 copies) 553 635 IPR002110 GO:0005515
Gabi4891g00112 924 SMART CG_1_2 29 147 IPR005559 GO:0003677
Gabi4891g00112 924 SMART ANK_2a 606 635 IPR002110 GO:0005515
Gabi4891g00112 924 SMART ANK_2a 645 676 IPR002110 GO:0005515
Gabi4891g00112 924 FunFam calmodulin-binding transcription activator 5 536 676 - -
Gabi4891g00112 924 Gene3D Immunoglobulins 365 460 IPR013783 -
Gabi4891g00112 924 Pfam IQ calmodulin-binding motif 795 814 IPR000048 GO:0005515
Gabi4891g00112 924 ProSiteProfiles IQ motif profile. 770 799 IPR000048 GO:0005515
Gabi4891g00112 924 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 719 821 IPR027417 -
Gabi4891g00112 924 Coils Coil 887 907 - -
Gabi4891g00112 924 ProSiteProfiles IQ motif profile. 793 821 IPR000048 GO:0005515
Gabi4891g00112 924 FunFam Calmodulin-binding transcription activator 5 365 461 - -
Gabi4891g00112 924 Pfam CG-1 domain 32 145 IPR005559 GO:0003677
Gabi4891g00112 924 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 25 903 - -
Gabi4891g00112 924 ProSiteProfiles IQ motif profile. 875 903 IPR000048 GO:0005515
Gabi4891g00112 924 SUPERFAMILY Ankyrin repeat 545 668 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4891g00112 Gabi-Chr4891 972212 982692 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4891g00112 31 907 CAMTA Transcription Factor Family AT3G16940 56.349 0.0 962
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Gabi4891g00112 CG-1 1.6e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4891g00112 K21596 - gmx:100793970 1549.64