Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4891g00111 ATGGATTCCACACATTGCAAGAGCTGGATATGGGAAGCATTAGGGAGGAAGCAAGAACCAGATGGCTTCGTCCCAATGAGATTCATGCCATACTTTGTAATTCCAAGTGGTACTATTGTATTATTTGACCGCAAAATGCTTAGGAACTTTCGAAAAGATGGGCACAACTGGAAGAAGAAAAAGGATGGGAAAACTGTTAAAGAAGCTCATGAGCACTTAAAAGTTGGCAATGAAGAAAGGATCCACGTATATTATGCACATGGCCAAGATAACCCAAACTTTGTTCGTAGATGTTATTGGCTGCTTGATAAGAGTCTGGAACACATAGTCCTTGTTCATTACCGTGAAACACAGGAGTTGCAAGGTTCTCCTGTCACTCCCGTAAATTCAAACTCTAGTTCTACCTCTGATCCAACTGTACCATGGATTTTATCAGAAGAGATAGATTCAGGGACTGCAACTCCATATGCCAGTGTTAAAAGTCATGAACTGAGGCTCCATGAGATTAATACACTTGAATGGGATGACCTAGTGGTTGCAAATGATCTCAACACGTCGACTGTGCCTAATGAAGGCAAAGGTCCGTATTTTGATCAACAAAATCAATTTTTACTGAATGACAGTTTCAACAACGTAACCAGCAATCCATCTGCAGGAATTCCTTCTTTTGATAGTTTAACTCAGCCAATTGCTGGGAGCAATAGTGTTCCTTACAATTTTTCAGAAAGGGTTAATCTTGAGAAAATGGACAATCAAGTAAATTCAAATGAGCAGAGGAATCATCCTGTTTCTGTAAGTGGTGTTGATTCCTTAGACACTTCGGTCAATGGGGGATTGCAAAGTCAGGACAGCTTTGGAATGTGGGTGAACCACATCATGTCTGATTCACCATGTTCATTGGGTGAATCAGCTCTTGAATCCTCAGTTTCATCCATGCATGAACCATATTCATCTGTGGTAGTGGATAATCAGCAACTTTCTCTGCCGGAACAAGTATTCAATATCACTGATGTGTCCCATGCATGGGTGTCTTCTACCGAGAAATCAAAGGTCCTGGTGACTGGATTCTTTCATAAGGACTATCTGCACCTTTCAAAGTCCAATCTATTGTGTGTCTGTGGTGATGTTAGTGTTCCTGCAGAAATCATTCAGGTTGGCGTCTATCGATGCTGGTTATCACCACATTCTCCTGGACTTGTGAATCTCTACTTGAGCTTTGATGGCCATAAGCCTATTAGCCAAGTTGTTAATTTTGAGTATCGTACTCCTGTTTTGCATGATCCTGCAGCTTCTATGGAAGAGAAGGACAACTGGGATGAATTTCGACTTCAAATGAGGCTTGCTTATTTGCTCTTTGCTAAACAACAAAGCCTTGATGTTTTCTCTTGTAAAATATCACCTAATGGACTGAAGGAGGCAAGGAAATTCGCCTCCAAAACATCATTTATTTCCAGTAGTTGGCAATACTTAATCAATTCAACTGAAGACAACAAAATTCCATTTTCACAAGCAAAAGATGCCCTATTTGAAATTGCATTGAAAAACAGACTAAAGGAATGGCTTTTGGAAAGAATTGGTTTAGGCTGTAAGACTACTGAATATGATGCGCAAGGCCAAAGTGTAATCCATTTGTGTGCTATTTTGGGATATACTTGGGCTGTTTCCCTATTTTCATGGTCAGGCCTATCACTGGATTTCCGCGATAAATTTGGATGGACAGCTCTTCATTGGGCAGCATATTGTGGAAGGGAGAAAATGGTTGCAACTCTGTTGTCTGCTGGGGCAAAGCCAAATTTGGTCACTGATCCAACTCCACAAAATCCTGGTGGATGTACTGCTGCTGATGTTGCTTATATGAGGGGTTATGATGGCTTAGCAGCTTATCTTTCAGAAAAGTCTCTGGTTGAGCAGTTCAATGACATGAGCTTAGCTGGAAATATCAGTGGCTCACTGCAAACTAGCGCGACTGATCCTGTAAATTCTGAGAACCTTAGTGAGGACCAGCTGTACCTGAAGGATACGTTGGCAGCTTACCGAACAGCTGCTGAGGCAGCAGCACGCATACAAGCTGCATTTAGGGAGCACTCCCTAAAATTGCAAACTCAGGCAGTTGAGTTTTCCAGTCCAGAGGCTGAAGCACGCAAAATAGTTGCAGCAATGAAGATTCAACATGCCTTTAGGAACTTTGAGACAAGGAAAATGATGAAAGCTGCCGCTCGCATTCAGCATAGATTCCGTACATGGAAGATTCGTAGAGAATTTCTCAACATGCGCCGTCAGGCTATTAAAATTCAAGCTGCTTTTCGGTGCTTCCAAGTGCGGAAGCATTATCGAAAAATTCTTTGGTCTGTTAGTGTGGTTGAGAAAGCAGTGCTGCGTTGGCGTTTGAAGAGAAGGGGCTTCCGTGGGCTGCGGGTTAATACTGTTGAAGAAGCAATGGGAGACCAGAATCAGCAAAGTGACACGGAGGAGGAATTCTTTCGGACTGGTAGGAAACAAGCTGAAGAACGTGTTGAGAGATCTGTAGTACGTGTGCAGGCTATGTTCCGTTCTAAGAAAGCACAAGAAGAGTACAGGAGGATGAAGTTGGCTCTTAAACAAGCAAAGATGGAAAGGGAATATGAACAACTCCTCAGTACTGAAGTTGACATGGAACTGAAGACATAG 2667 0.4229 MDSTHCKSWIWEALGRKQEPDGFVPMRFMPYFVIPSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPNFVRRCYWLLDKSLEHIVLVHYRETQELQGSPVTPVNSNSSSTSDPTVPWILSEEIDSGTATPYASVKSHELRLHEINTLEWDDLVVANDLNTSTVPNEGKGPYFDQQNQFLLNDSFNNVTSNPSAGIPSFDSLTQPIAGSNSVPYNFSERVNLEKMDNQVNSNEQRNHPVSVSGVDSLDTSVNGGLQSQDSFGMWVNHIMSDSPCSLGESALESSVSSMHEPYSSVVVDNQQLSLPEQVFNITDVSHAWVSSTEKSKVLVTGFFHKDYLHLSKSNLLCVCGDVSVPAEIIQVGVYRCWLSPHSPGLVNLYLSFDGHKPISQVVNFEYRTPVLHDPAASMEEKDNWDEFRLQMRLAYLLFAKQQSLDVFSCKISPNGLKEARKFASKTSFISSSWQYLINSTEDNKIPFSQAKDALFEIALKNRLKEWLLERIGLGCKTTEYDAQGQSVIHLCAILGYTWAVSLFSWSGLSLDFRDKFGWTALHWAAYCGREKMVATLLSAGAKPNLVTDPTPQNPGGCTAADVAYMRGYDGLAAYLSEKSLVEQFNDMSLAGNISGSLQTSATDPVNSENLSEDQLYLKDTLAAYRTAAEAAARIQAAFREHSLKLQTQAVEFSSPEAEARKIVAAMKIQHAFRNFETRKMMKAAARIQHRFRTWKIRREFLNMRRQAIKIQAAFRCFQVRKHYRKILWSVSVVEKAVLRWRLKRRGFRGLRVNTVEEAMGDQNQQSDTEEEFFRTGRKQAEERVERSVVRVQAMFRSKKAQEEYRRMKLALKQAKMEREYEQLLSTEVDMELKT 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4891g00111 888 ProSiteProfiles Ankyrin repeat region circular profile. 570 598 - -
Gabi4891g00111 888 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 681 785 IPR027417 -
Gabi4891g00111 888 Pfam CG-1 domain 35 116 IPR005559 GO:0003677
Gabi4891g00111 888 FunFam Calmodulin-binding transcription activator 5 329 425 - -
Gabi4891g00111 888 FunFam calmodulin-binding transcription activator 5 500 640 - -
Gabi4891g00111 888 SMART ANK_2a 609 640 IPR002110 GO:0005515
Gabi4891g00111 888 SMART ANK_2a 570 599 IPR002110 GO:0005515
Gabi4891g00111 888 Gene3D - 495 639 IPR036770 -
Gabi4891g00111 888 ProSiteProfiles Ankyrin repeat profile. 570 602 IPR002110 GO:0005515
Gabi4891g00111 888 ProSiteProfiles IQ motif profile. 734 763 IPR000048 GO:0005515
Gabi4891g00111 888 ProSiteProfiles IQ motif profile. 839 867 IPR000048 GO:0005515
Gabi4891g00111 888 Pfam Ankyrin repeats (3 copies) 517 599 IPR002110 GO:0005515
Gabi4891g00111 888 Coils Coil 851 871 - -
Gabi4891g00111 888 SMART CG_1_2 1 118 IPR005559 GO:0003677
Gabi4891g00111 888 SUPERFAMILY Ankyrin repeat 509 632 IPR036770 -
Gabi4891g00111 888 ProSiteProfiles IQ motif profile. 718 744 IPR000048 GO:0005515
Gabi4891g00111 888 Gene3D - 733 781 - -
Gabi4891g00111 888 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 35 867 - -
Gabi4891g00111 888 ProSiteProfiles IQ motif profile. 757 785 IPR000048 GO:0005515
Gabi4891g00111 888 SUPERFAMILY E set domains 334 421 IPR014756 -
Gabi4891g00111 888 SMART iq_5 837 859 IPR000048 GO:0005515
Gabi4891g00111 888 SMART iq_5 733 755 IPR000048 GO:0005515
Gabi4891g00111 888 SMART iq_5 756 778 IPR000048 GO:0005515
Gabi4891g00111 888 SMART iq_5 680 702 IPR000048 GO:0005515
Gabi4891g00111 888 Pfam IQ calmodulin-binding motif 759 778 IPR000048 GO:0005515
Gabi4891g00111 888 Gene3D Immunoglobulins 329 424 IPR013783 -
Gabi4891g00111 888 ProSiteProfiles CG-1 DNA-binding domain profile. 1 123 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4891g00111 Gabi-Chr4891 972200 982692 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4891g00111 12 871 CAMTA Transcription Factor Family AT3G16940 54.462 0.0 901
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Gabi4891g00111 Ank_2 2.5e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4891g00111 K21596 - gmx:100793970 1425.22