Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4891g00101 ATGGTGGATCCAAGTGGAAAAGGATCAGAAGCAGAGGATGCCAACCCTAACGGTGGTGCTTCATCAGGGAACAGCCCAAGCAATGAGCAGAAGAAAACCTGCGCCGATTGCGGCACCACCAAGACCCCTCTATGGAGGGGTGGACCCGCAGGACCTAAGTCGCTTTGCAACGCTTGTGGGATCAGAAGCAGGAAGAAGAAAAGAGCGATTTTGGGGATAAGCAAAGGAAGCAACGAGGATAGCAAAAAGGGGAAAAGGAGCAGCGGTAGCAGCAAGGTTGGTGGTGGTGGTGATGGTTTGAGCTTGAAGCAGAGTCAGAGACTATTTGCTTTTGGGAGGGAGGTTTTGATGCAGCGATCGCATTGGAAGAAATTGGGAGAGGAAGAACAAGCTGCGGTTTTGTTGATGTCACTCTCTTATGGATCGGTTTATGCCTAA 438 0.5046 MVDPSGKGSEAEDANPNGGASSGNSPSNEQKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGISKGSNEDSKKGKRSSGSSKVGGGGDGLSLKQSQRLFAFGREVLMQRSHWKKLGEEEQAAVLLMSLSYGSVYA 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4891g00101 145 ProSitePatterns GATA-type zinc finger domain. 34 59 IPR000679 GO:0006355|GO:0043565
Gabi4891g00101 145 MobiDBLite consensus disorder prediction 69 101 - -
Gabi4891g00101 145 CDD ZnF_GATA 33 86 IPR000679 GO:0006355|GO:0043565
Gabi4891g00101 145 PANTHER OS01G0976800 PROTEIN 20 145 - -
Gabi4891g00101 145 Pfam GATA zinc finger 34 68 IPR000679 GO:0006355|GO:0043565
Gabi4891g00101 145 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 27 68 - -
Gabi4891g00101 145 Gene3D - 28 93 IPR013088 GO:0006355|GO:0008270
Gabi4891g00101 145 SMART GATA_3 28 82 IPR000679 GO:0006355|GO:0043565
Gabi4891g00101 145 MobiDBLite consensus disorder prediction 15 37 - -
Gabi4891g00101 145 MobiDBLite consensus disorder prediction 1 57 - -
Gabi4891g00101 145 ProSiteProfiles GATA-type zinc finger domain profile. 28 64 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4891g00101 Gabi-Chr4891 890851 891974 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4891g00101 1 145 C2C2-Gata Transcription Factor Family AT5G49300 53.378 1.71e-41 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gabi4891g00101 GATA 6.5e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4891g00101 - - aprc:113847917 211.46