Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4891g00098 ATGAATCTCAGAATTGGCAACAGATCCACGTCAACTGCAAGTGCCGCTATGAAGTCCTTCGCCGCCGTCTCCGACCAGTTTCCGGCAGGCCTGCGGGTTCTTTTGGTGGATGCTGATCCCACGTGCCTCATGTTCCTTGAGAAGCAGCTGCGCACATGTCTCTATCAAGTTACGAAATGCAGTCGAGCTGAGACTGCACTCGCACTCCTCAGAGACAACGAAAATGGGTTTGACATCGTTATGAGCGATGTACATATGCCAGAAAATGACATGGACGGATTTAAACTTTTACAGCACATTGTGTTGGAGATGGACCTTCCAGTTATAATATTTTCTGCAGATGATGATAAAAATGTTGTTATGAAGTGTCTAACACATGGTGCTTGTGCTTATATAATCAAACCTGGCAAAATGGATGTTTTTAAAAACATATGGCAGCATGTGTTTCGCAAGAAAATGAATGAGCAGAAACATACAGATTACTCATCCACATCAACGAAGCCACGGCTTGTTTGGTCTCCTGAGCTTCATCGACAGTTTGCGGCTGCTGTGATTGAACTGGGGGTTAACAATGCTGCTCCTAAAAAAATTCTGGAATTGATGAACGTCCATGGTCTCACTAGAGATCACGTTGCCAGCCATCTCCAGAAATACCGTTTGCGTCTTCAAAGGGGGAGTGGAGTTTCTCCGCACCAGAGTAACTTCAACTCCTTTCTCCGCCCACAAGCAGGAGTCCCAATGCCTCTCATGGATCAAAGATTTGAAATCCCCAGGTTAGAATTTGGAGGAGGGCAACAACAAAATTTAAGTAGTAGTAAACCGATGATCTTACTTCACGAAATACCCACCAACACGGAGCTAAAACAGTTTGCCATTTTGCACCAGTTTACCCAGTTCCTTGGTAACATAAATATGCAAGTCAATGCTTGTGCTACACAGAGCAAACCCTTATTGCAGCTGATGACACAATCCCAACCTAGAGGTACTTCAGGTACAAGCAGTATCACAAAGAAAGGCCCGTTTCAGCAGGAAGGTACTTCCGGAATGAAAGGACCTGATGGATTTCCAAGTTATGAGATATTGAATGAACTGCACCATCAGAAGTCCCATGATTTGGACGCAACAAACCCATGCCTGCCTTATGTTGCCTCCCAGCATGCAAATTTACAAGGTTACATTGACGTCTCACCGTCAGTTTTAGTCCAACAGGGCTATTCTTCTTCCCAACAGACTGGACAAAGCAGAGATGCCGCTTTGATTGGAAAAAATATGTTGTCCCTTGGAGAATGCTTGAAACATGACAATCTACAAAATGCTAGTCAACACCTTAATGAGCTTCCTGTTGACGATCCAATAAGGGCTACGGCTGAAATTAATCTCAATGCAATCCCCAAGACTAACCTGAACACTGAGCATAATGGAGAAGAGGATCTTATGAGTGCACCTCTGAAACAGCAAGAAGGCCCAACTGAGTAG 1476 0.4444 MNLRIGNRSTSTASAAMKSFAAVSDQFPAGLRVLLVDADPTCLMFLEKQLRTCLYQVTKCSRAETALALLRDNENGFDIVMSDVHMPENDMDGFKLLQHIVLEMDLPVIIFSADDDKNVVMKCLTHGACAYIIKPGKMDVFKNIWQHVFRKKMNEQKHTDYSSTSTKPRLVWSPELHRQFAAAVIELGVNNAAPKKILELMNVHGLTRDHVASHLQKYRLRLQRGSGVSPHQSNFNSFLRPQAGVPMPLMDQRFEIPRLEFGGGQQQNLSSSKPMILLHEIPTNTELKQFAILHQFTQFLGNINMQVNACATQSKPLLQLMTQSQPRGTSGTSSITKKGPFQQEGTSGMKGPDGFPSYEILNELHHQKSHDLDATNPCLPYVASQHANLQGYIDVSPSVLVQQGYSSSQQTGQSRDAALIGKNMLSLGECLKHDNLQNASQHLNELPVDDPIRATAEINLNAIPKTNLNTEHNGEEDLMSAPLKQQEGPTE 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4891g00098 491 Pfam Myb-like DNA-binding domain 171 219 IPR001005 -
Gabi4891g00098 491 FunFam Two-component response regulator 163 226 - -
Gabi4891g00098 491 PANTHER TWO-COMPONENT RESPONSE REGULATOR 31 313 IPR045279 GO:0009736
Gabi4891g00098 491 SMART REC_2 31 145 IPR001789 GO:0000160
Gabi4891g00098 491 Gene3D - 166 224 - -
Gabi4891g00098 491 MobiDBLite consensus disorder prediction 466 491 - -
Gabi4891g00098 491 ProSiteProfiles Response regulatory domain profile. 32 149 IPR001789 GO:0000160
Gabi4891g00098 491 Pfam Response regulator receiver domain 33 140 IPR001789 GO:0000160
Gabi4891g00098 491 MobiDBLite consensus disorder prediction 323 358 - -
Gabi4891g00098 491 NCBIfam myb-like DNA-binding domain, SHAQKYF class 167 221 IPR006447 GO:0003677
Gabi4891g00098 491 MobiDBLite consensus disorder prediction 323 343 - -
Gabi4891g00098 491 CDD REC_typeB_ARR-like 33 149 - -
Gabi4891g00098 491 SUPERFAMILY CheY-like 30 158 IPR011006 -
Gabi4891g00098 491 Gene3D - 31 165 - -
Gabi4891g00098 491 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 164 223 IPR017930 -
Gabi4891g00098 491 SUPERFAMILY Homeodomain-like 164 224 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4891g00098 Gabi-Chr4891 856459 860058 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4891g00098 24 205 Response Regulator Gene Family AT4G16110 52.966 1.44e-71 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gabi4891g00098 Response_reg 1.7e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4891g00098 - K14491 gmx:100809583 488.419