Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4891g00096 ATGAATCTCGGCAACGGCAAGGGACCCATGTCGACGACGGTTACTTCAAGTGTGGCTATGAAATCCGGCGACTCTGTTTCCGACCAGTTTCCGGCGGGTCTGCGGGTTCTGGTGGTTGATGATGATCCCACGTGCCTCATGATTCTTGAGAAGATGCTGCGCACATGTCTCTATGAAGTTACCAAATGTCATCGAGCGGAGACTGCACTCTCACTCCTTAGAGAGAATAAAAATGGGTTTGACATTGTTATTAGCGATGTACATATGCCCGACATGGATGGATTTAAGCTTTTAGAGCACATTGGGTTGGAGATGGATCTTCCGGTTATTATGATGTCTGCAGATGATGGTAAAAATGTTGTTATGAAGGGTGTAACACATGGTGCTTGTGATTACCTAATCAAACCTGTTCGCATAGAAGCTTTGAAGAACATATGGCAGCATGTGGTTCGCAAGAGAAAGAATGAGTGGAAAGATACGGAGCAATCAGGTAGTGCTGACGAAGGAGATCGACAGCAAAAGGCATCTGATGATGCAGATTACTCATCCTCAGCAAATGAAGGCACTTGGAGGAACTCAAAGAAGAGAAGGGATGAAGAAGAGGAAGCAGAGGAGAGAGATGACACATCCACATTGAAGAAGCCACGGGTTGTTTGGTCTGTTGAGCTTCATCAACAGTTTGTGGCTGCTGTGGATCAATTGGGAATTGACAAGGCTGTTCCAAAAAAAATTCTGGAATTGATGAACGTCCATGGGCTCACTAGAGAAAATGTTGCCAGCCATCTCCAGAAATACCGATTGTATCTTCGAAGGCTGAGTGGAGTTTCTCAGCACCAGAGTAACTTGAACAACTCCTTTCTCAGCCCACAAGAGGCAACATTTGGGACAATGCCTTCAATTAATGGAATTGATCTTCAAACTTTTGCAGTTGCTGGTCAGCTCCCAGCACAAAGTCTAGCCACACTTCAAGCCGCAGGGCTTGGTAGATCAACTGCAAAAGCAGGCGTCCCCATGCCTCTAATGGATCAAAGAAACCTTTTCAGTTTTGAAAATCCAAGGTTAAGATTTGGAGAAGGACAACAACAACATTTAAGCACTAGTAAACCAATGAACTTACTTCATGGAATACCCACCAACATGGAGCCAAAGCAGCTTGCCAATTTGCACCAGTCTACCCAATCCCTTGGCAGCTTGAATATGCGAGTCAATGCTTGTGCTACACAGAGCAACCCCTTATTGATGCAGATGGCACAATCCCAACCTAGAGGTCAGATGCCAAGTGAAAATACTGGTCCTCGTGTTCCCAGACTTCCGTCATCTTTGGGGCAGCCAGCTGTACCAAATGGAATTTCTAATGGTCTTCTGGGCAGAAATGGGATTGTCGCTAGTAACAGATCACCTTCTTATAATTCTGTTCCACTGAGTTCTTCATTATTGAGTTTTCCCATGAATCAAAGCACTGAAATGTCTGTCAGTAGTTTCCCTCTTGGAAGCACTCCAGGTATATCCAGTATCACAACAAAAGGCTCGTTTCAAGAGGAAGTTACTTCTGGAATGAAAGGACCTGGTGGATTTCCAACTTATGATATTTTTAATGAACTACATCATCACAAGTCCCATGATTGGGACATAACAAACCCAGGCCTGACGTATAATGCCTCCCAGCATGCAAATCCTTTACAAGGTAACATTGATGTTTCACCATCAGTTTTAGTCCATCAGGGCTTTTCTTCTACCCAACAGACTGGACAAAGCAGAAATGCCACTTTGACTGGAAAAAATAGGTTCTCTCTGGGAGAAGGCTTGGAACAAGGTAATCTCCAAAGTTCTGGACAACACCTCAATACGCTTCTTGTTGACAATTCAATAAGGGTTAAGGCGGAAAGAATTCCTGATGCAAGCTCACAGACTAACTTCTTCACAGAGCATTATGGACAAGAGGATCTTATGAGTGCACTTCTGAAACAGCAGGAAGGCATTGGACCAGCTGAGAATGAGTATGACCTTGATGGATATTCTTTGGACAACATTCCTGTTTAG 2040 0.4417 MNLGNGKGPMSTTVTSSVAMKSGDSVSDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCHRAETALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDTEQSGSADEGDRQQKASDDADYSSSANEGTWRNSKKRRDEEEEAEERDDTSTLKKPRVVWSVELHQQFVAAVDQLGIDKAVPKKILELMNVHGLTRENVASHLQKYRLYLRRLSGVSQHQSNLNNSFLSPQEATFGTMPSINGIDLQTFAVAGQLPAQSLATLQAAGLGRSTAKAGVPMPLMDQRNLFSFENPRLRFGEGQQQHLSTSKPMNLLHGIPTNMEPKQLANLHQSTQSLGSLNMRVNACATQSNPLLMQMAQSQPRGQMPSENTGPRVPRLPSSLGQPAVPNGISNGLLGRNGIVASNRSPSYNSVPLSSSLLSFPMNQSTEMSVSSFPLGSTPGISSITTKGSFQEEVTSGMKGPGGFPTYDIFNELHHHKSHDWDITNPGLTYNASQHANPLQGNIDVSPSVLVHQGFSSTQQTGQSRNATLTGKNRFSLGEGLEQGNLQSSGQHLNTLLVDNSIRVKAERIPDASSQTNFFTEHYGQEDLMSALLKQQEGIGPAENEYDLDGYSLDNIPV 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4891g00096 679 Pfam Myb-like DNA-binding domain 216 266 IPR001005 -
Gabi4891g00096 679 CDD REC_typeB_ARR-like 36 150 - -
Gabi4891g00096 679 MobiDBLite consensus disorder prediction 190 211 - -
Gabi4891g00096 679 FunFam Two-component response regulator 210 273 - -
Gabi4891g00096 679 PANTHER TWO-COMPONENT RESPONSE REGULATOR 34 360 IPR045279 GO:0009736
Gabi4891g00096 679 ProSiteProfiles Response regulatory domain profile. 35 150 IPR001789 GO:0000160
Gabi4891g00096 679 SUPERFAMILY CheY-like 33 157 IPR011006 -
Gabi4891g00096 679 MobiDBLite consensus disorder prediction 156 211 - -
Gabi4891g00096 679 SMART REC_2 34 146 IPR001789 GO:0000160
Gabi4891g00096 679 Gene3D - 34 172 - -
Gabi4891g00096 679 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 213 270 IPR017930 -
Gabi4891g00096 679 MobiDBLite consensus disorder prediction 156 177 - -
Gabi4891g00096 679 SUPERFAMILY Homeodomain-like 211 271 IPR009057 -
Gabi4891g00096 679 PIRSF RR_ARR_type-B 16 669 IPR017053 GO:0003677|GO:0003700|GO:0009736
Gabi4891g00096 679 Pfam Response regulator receiver domain 36 144 IPR001789 GO:0000160
Gabi4891g00096 679 NCBIfam myb-like DNA-binding domain, SHAQKYF class 214 267 IPR006447 GO:0003677
Gabi4891g00096 679 Gene3D - 211 273 - -
Gabi4891g00096 679 FunFam Two-component response regulator 34 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4891g00096 Gabi-Chr4891 841148 846162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4891g00096 69 679 Response Regulator Gene Family AT3G16857 51.231 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gabi4891g00096 Response_reg 6.4e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4891g00096 - K14491 gmx:100814930 1177.93