Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4891g00089 ATGGCTTCAACAGACATCAGAGGCATTTTGACAGCTTTCAATCCTTCTCTCGATTTGTTCGCTATCACCACTGGAGACGGTCGCGTCAAGATATGGGATACACTGAAAGGTCAGGTTCAGACTGAGTTTGCAGATATTACTTCAACTGATACAACAACAACAACTATATATGATAGGTCCATTAAGGGCCATCTTTCAGTAGATTATACATGCATCAAGTGGTTGTCTTTCGAAAGAAAGAGGAAAAGGAAGCATGTGTCCTCATTGTTAGTGCTTGGAACGGGTAGTGGTGATGTTTTAGCACTCGACGTGTCTGCTGGTCAATTGAGTTGGAGAATTAGTGACTGTCATCCCGGAGGTGTGAGAGGCATTTCGTCTTCGGCGAATGGATCAAGCATTTATACTGCAGGTGCAGATGGGATGATATGCACGATAGATTTCATCACCGGAAACCTGTTGGAGAAATTTAAAGCTTCTACAAAGGCAGTGTCCTGTATGTCTGTTTCTCCGGATGGGAAGACGTTAGCTACTGCAGCAGCGCAATTGAAGATTTTTAACTGTTCCACTCACAAAAAGATTCAAAAGTTCTCTGGTCATCCTGGATCTGTTCGGTGCATGGTCTTCACTGAAGATGGCAAATATATCCTCTCGTCTGCTGTTGGTGAAAGATATGTTGCTATTTGGAGGATAGATGGAGCTAAAAAGCAGTCAGCTAGCTGTGTTCTTGCAATGGAGCACCCTGCCGTCTTTCTTGATAGCAGGTGCATTGATACCGGGGAACATGATGAGGCTGGGATATGTGTTTTGGCCATCTCAGAAGTTGGTCTTTGTTATTTATGGTTTGGAAATAGCATTGAAGAACTGCGTAATGCAAAGCCCACAAAAATATCATTATCGTTAGAAGACATGTCCTCTAGAAATTACAAGGGAGCACTGCCTGCAATATATGCTGCAAAATTACAAGGCATCCAGAAGCCAGCCTCTGGGCAGGTTTTTCTTGTTTCTGGATTGCTTGTAAAACCATCATTTAAAAAAATTCTAGTGCATTCCGGTACAGATGTAAAGTTGAATGTCTCCCATGATGGTGTTCTTCTTCCAATGAGTCAATCTTTTGTCAAATCTAAGAAGGGGACAGGTGTACAGAGAGTTACTGCACTAGACCGTGCTAATGCTGAGGATGCCTTGCTTCCAATTCCTAAGGTTTTTGATTCTCATGAGAAAGAGAAAGCATTTCAAGACTCTTCGGACAAGCATGTTATAGATGATTTGCGTACAACTAGTAAAGCTGATTCTCTTGAGATAGAAGATGATATGGTCCAAAGTGAGACTGATGTAATTTGCATGGAGGACCGGCTGAGGTCACTAGGGATGCTTGACATTGAAAGTGACTCTGCATCAAACTTTGAACTTTGTTCTACATTGTTGAAGGGTATTGATCTGGAAGCTGCTATTTCAGTGAAAAAGATAAGAGCAGCTGTTTTGTCTATGGCTCCAAGCGAAGCATTCAAGCTACTGGAAGTGTTGCTTGCTGTATGGCAATCAAGGTCATCCAGTGGAAAGTATGTTCTTCCATGGATATATAGCATTTTAGTGAATCATGGTCACAATGTCATTGCTCAAGAATCTGTGACAAGTATGCTTGATTCCTTATACAAGATTACCAATTATAGAGGGTATACTCTTCAGCCTTTATTGCAATTATCAGGTCGTCTGCAACTGGTGACATCACAGATTGACAAGGCTTCTCAGACAATAAGTCATTCGTTGCATGATCTCCAAATGGAAGAAAGTGGAGATGAGGATGAATATTATCATGAGGAAGAAGATTACGCATCTGAAATAAGTAGCGATGATGGAAGCTAG 1863 0.416 MASTDIRGILTAFNPSLDLFAITTGDGRVKIWDTLKGQVQTEFADITSTDTTTTTIYDRSIKGHLSVDYTCIKWLSFERKRKRKHVSSLLVLGTGSGDVLALDVSAGQLSWRISDCHPGGVRGISSSANGSSIYTAGADGMICTIDFITGNLLEKFKASTKAVSCMSVSPDGKTLATAAAQLKIFNCSTHKKIQKFSGHPGSVRCMVFTEDGKYILSSAVGERYVAIWRIDGAKKQSASCVLAMEHPAVFLDSRCIDTGEHDEAGICVLAISEVGLCYLWFGNSIEELRNAKPTKISLSLEDMSSRNYKGALPAIYAAKLQGIQKPASGQVFLVSGLLVKPSFKKILVHSGTDVKLNVSHDGVLLPMSQSFVKSKKGTGVQRVTALDRANAEDALLPIPKVFDSHEKEKAFQDSSDKHVIDDLRTTSKADSLEIEDDMVQSETDVICMEDRLRSLGMLDIESDSASNFELCSTLLKGIDLEAAISVKKIRAAVLSMAPSEAFKLLEVLLAVWQSRSSSGKYVLPWIYSILVNHGHNVIAQESVTSMLDSLYKITNYRGYTLQPLLQLSGRLQLVTSQIDKASQTISHSLHDLQMEESGDEDEYYHEEEDYASEISSDDGS 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4891g00089 620 PANTHER OS03G0300300 PROTEIN 3 618 - -
Gabi4891g00089 620 Gene3D - 145 281 IPR015943 GO:0005515
Gabi4891g00089 620 Gene3D - 6 144 IPR015943 GO:0005515
Gabi4891g00089 620 Pfam Dip2/Utp12 Family 483 575 IPR007148 -
Gabi4891g00089 620 SMART WD40_4 189 229 IPR001680 GO:0005515
Gabi4891g00089 620 SMART WD40_4 149 186 IPR001680 GO:0005515
Gabi4891g00089 620 SMART WD40_4 106 146 IPR001680 GO:0005515
Gabi4891g00089 620 SMART WD40_4 3 33 IPR001680 GO:0005515
Gabi4891g00089 620 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 12 232 IPR011047 -
Gabi4891g00089 620 ProSiteProfiles Trp-Asp (WD) repeats profile. 196 238 IPR001680 GO:0005515
Gabi4891g00089 620 Pfam WD domain, G-beta repeat 192 228 IPR001680 GO:0005515
Gabi4891g00089 620 MobiDBLite consensus disorder prediction 595 620 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4891g00089 117 228 U-box Gene Family AT2G33340 28.448 2.09e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4891g00089 K14546 - gmx:100815458 981.089