Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4891g00080 ATGGTGGCGGAGCCGTTATTTTGCGACTACGATCAAATGCAATCGGAGCCGTCAACATCATTCCGGGTTGAGTCATCTCGGATTTTCGATGAGTTGCCGGAAGCCACCATTGTCTCCGTCTCTCGTCCAGACGCCGCCGATATCAGCCCCATGCTCCTCAAATACACTATTGAGTTTCATTACAAACAGTTCAAGTGGCAGCTGGTGAAGAAAGCTTCTCAAGTAATTTATTTGCATTTTACATTAAAGAAACGCGCCTTCATTGAGGAGATTCATGAGAAGCAAGAACAAGTTAAAGAATGGCTTCAAAATATAGGAATAGGAGATCAGACTCCTATGTTGCAAGATGATGATGAAGCTGATGATGAAAGCATTCCTTTATATAATCATGATGAGAGTGCTAAAGACAGAGATGTTCCATCTAGTGCTGCTCTACCAATTATGCGGCCAGCCTTAGGAAGACAACATTCAATATCAGGCAGGGCAAAGATTGCTATGCAAGGGTATCTGAATCACTTTTTGGGAAATATCAGTATTGTTAACTCTCCAGAGGTTTGCAAGTTTTTGGAGGTATCAAAGTTATCTTTTTCACCAGAATATGGCTCTAAGCTGAAGGAAGAATACGTGATGGTGATGCATCTGGCTAAAATTGCAAAGGATGATGATTCCAGAAAGTGTTGTATGTCAGACTGTTTTAGTTGTTGTAATGATAACTGGCAAAAGGTTTGGGCTGTACTAAAACCTGGATTCTTGGCATTGCTGGCAGATCCTTTTGATGTGCAACCTTTAGACATTATTGTTTTTGATGTACTACCTACCTCAGATGGGATTGGGCATGGTCCTCTAGTAGCAAAGGAAACAAAGGAACGGAATCCTTTACGCCATTCATTCAATGTCATTTGTGGAAACCGGAGCATTAATGTTAGAGTGAAAAGTAGTGGTAAAGTTAAAGATTGGGTTGCTGCAATTAATGATGCTGGACTTAGGCGTTCTGAAGGATGGTGTCATCCCCACCGCTATGGTTCTTTTGCTCCTCCAAGAGGCTTAATCGAAGATGGTTGTCAGGCTCAGTGGTTTATAGATGGACGAGCTGCATTTGAGGCCATTGCTTCTTCAATTAAGGATGCAAAATCAGAGATATTTATTTGTGGCTGGTGGGTGTGCCCAGAACTGTATCTACAACGTCCTTTTCACACTCATGCTACATCAAGGCTTGATAATTTGCTGGAAGAAAAAGCTAAGCAAGGGGTTCAGATTTACATTCTTCTATACAAAGAGGTGGCACTTGCTTTGAAAATCAACAGTTTTTATAGCATGAAAAAGCTTCTTAGCATTCATGAGAATGTGAGGGTATTGCGTTATCCTGACCACTTTTCTACTGGTGTTTACCTGTGGTCGCACCATGAAAAACTTGTCATTGTTGATCACCAGATTTGCTTTATTGGAGGACTGGATTTGTGCTTTGGTCGTTATGACACATGTGAACATAAAGTGGGGGATTCCCCTCCTCTGATTTGGCCTGGAAAGGACTATTATAACCCTAGGGAATCTGAACCAAATTCGTGGGAAGATACAATGAAAGATGAATTGGAACGTGGAAAATATCCTCGTATGCCTTGGCACGATGTTCATTGTGCTCTTTGGGGGCCACCTTGTCGTGACATAACGAGGCACTTTGTTCAAAGATGGAATTATGCTAAGAGGAACAAAGCTCCAAATGAGCAAGCAATACCATTACTTATTCCTCGGCATCATATGGTTATTCCACATTACATGGGAAGCAGCAGAGAGGTGCAGATTGAAAGCAAGAATACTGACAATTATAGAGCCATCAAGAGGGAAGATTCCTTTTCCTCATCATCCCAAGATATTCCTCTACTTTTGCCTCAGGAGTCTGGTGGGCTAGATACTTCTGAAGGAGACCAAAAATTTAATGGATTAAGCTCCTTTTCACATCACCTTGACCTGCCGAGCAGGGTCAGCAGTGGTCTTCTCTATTCATTCTGGAAGGCCAAAATTGAACCAGTAGGTCCAGAAACACCAATGAAGCCTTTTGTAGACAATCTTGATGGTGTGGATTATCAAGGGAAAATGTCTTTAGATAGAGTGTCTCATGTTGATATACAAAGTATAGATCCAGAATGGTGGAAAACACCAGAGCGTGGTAATCATGGAGGTTTTGCAGATGAATCGGGGCAAGTTGGTCCTCGTGTTTCCTGCCGTTGTCAGGTTATTAGGAGTGTCAGTCAATGGTCTGCTGGAACAAGCCAAACCGAAGAGAGCATCCACAATGCTTATTGCTCTCTTATTGAGAAAGCAGAATACTTTATCTACATCGAGAATCAATTTTTTATCTCAGGTCTTTCAAGAGATGAGAAAATACGAAATCGTGTGTTAGAAGCTTTATATCAACGGATTATGCGAGCTTACAATGATAAAAAACCTTTTAGGGTTATAATTGTCATACCTCTCCTGCCTGGCTTCCAGGGGGGCCTGGATGATAGTGGTGCAGCATCTGTGAGAGCCATAATGCATTGGCAGTATCGAACCATTTGTAGAGGACAGAATTCTATATTACATAATCTTTATGAATTTCTTGGTCCAAGAATGCATGATTACATATCTTTCTACGGCCTCAGGTCCTATGGTAGACTCTTTAATGGTGGTCCTATGGCAACCAGCCAGGTGTACGTTCATAGTAAAATCATGATTGTTGATGATCGTACATGTTTGATTGGATCTGCTAATATTAATGATAGGAGTTTACTTGGCTCCAGAGATTCTGAGATTGGTATGATTATAGAAGATGGAGAGTTGATTGGGTCTTTTATGGATGGAAAGCCTTGGAAGGCAGGAAAGTTCTCCTTGACTCTCCGATTGTCATTATGGTCTGAGCATTTAGGTCTCCGAGCAGGAGAGATCAATCAAATAATGGACCCAGTCATTGAGTCTACTTACAGGGATATTTGGATGGCAACAGCAAAGACAAACACTACAATTTACCAGGATGTCTTTTCTTGCGTACCTAATGATCTGATACACACCAGATTTTCTTTCAGACAAAGCGTAGCTTTTTGGAAAGAAAAAATAGGTCATACAACCATTGATTTAGGAATAGCCCCAAAAAAGTTAGAAAGTGATCATAATAGAGGTGGAGAGTACATCGACCCCTTGGAGAGATTAGCTTCAGTGAGGGGTTATCTTGTTTCTTTTCCCCTGGAGTTCATGAGTTTAGAAAATCTAAGACCTGCTTTTAATGAGAGCGAGTACTACGCTGCTCATGTTTTCCATTGA 3294 0.4129 MVAEPLFCDYDQMQSEPSTSFRVESSRIFDELPEATIVSVSRPDAADISPMLLKYTIEFHYKQFKWQLVKKASQVIYLHFTLKKRAFIEEIHEKQEQVKEWLQNIGIGDQTPMLQDDDEADDESIPLYNHDESAKDRDVPSSAALPIMRPALGRQHSISGRAKIAMQGYLNHFLGNISIVNSPEVCKFLEVSKLSFSPEYGSKLKEEYVMVMHLAKIAKDDDSRKCCMSDCFSCCNDNWQKVWAVLKPGFLALLADPFDVQPLDIIVFDVLPTSDGIGHGPLVAKETKERNPLRHSFNVICGNRSINVRVKSSGKVKDWVAAINDAGLRRSEGWCHPHRYGSFAPPRGLIEDGCQAQWFIDGRAAFEAIASSIKDAKSEIFICGWWVCPELYLQRPFHTHATSRLDNLLEEKAKQGVQIYILLYKEVALALKINSFYSMKKLLSIHENVRVLRYPDHFSTGVYLWSHHEKLVIVDHQICFIGGLDLCFGRYDTCEHKVGDSPPLIWPGKDYYNPRESEPNSWEDTMKDELERGKYPRMPWHDVHCALWGPPCRDITRHFVQRWNYAKRNKAPNEQAIPLLIPRHHMVIPHYMGSSREVQIESKNTDNYRAIKREDSFSSSSQDIPLLLPQESGGLDTSEGDQKFNGLSSFSHHLDLPSRVSSGLLYSFWKAKIEPVGPETPMKPFVDNLDGVDYQGKMSLDRVSHVDIQSIDPEWWKTPERGNHGGFADESGQVGPRVSCRCQVIRSVSQWSAGTSQTEESIHNAYCSLIEKAEYFIYIENQFFISGLSRDEKIRNRVLEALYQRIMRAYNDKKPFRVIIVIPLLPGFQGGLDDSGAASVRAIMHWQYRTICRGQNSILHNLYEFLGPRMHDYISFYGLRSYGRLFNGGPMATSQVYVHSKIMIVDDRTCLIGSANINDRSLLGSRDSEIGMIIEDGELIGSFMDGKPWKAGKFSLTLRLSLWSEHLGLRAGEINQIMDPVIESTYRDIWMATAKTNTTIYQDVFSCVPNDLIHTRFSFRQSVAFWKEKIGHTTIDLGIAPKKLESDHNRGGEYIDPLERLASVRGYLVSFPLEFMSLENLRPAFNESEYYAAHVFH 1097
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gabi4891g00080 1097 Gene3D Endonuclease Chain A 350 588 - -
Gabi4891g00080 1097 Pfam PLD-like domain 767 941 IPR025202 -
Gabi4891g00080 1097 SUPERFAMILY Phospholipase D/nuclease 735 944 - -
Gabi4891g00080 1097 Gene3D - 227 332 IPR011993 -
Gabi4891g00080 1097 CDD PLDc_vPLD1_2_yPLD_like_2 754 938 - -
Gabi4891g00080 1097 Coils Coil 84 104 - -
Gabi4891g00080 1097 SUPERFAMILY PH domain-like 235 326 - -
Gabi4891g00080 1097 FunFam Phospholipase 728 948 - -
Gabi4891g00080 1097 SUPERFAMILY Phospholipase D/nuclease 320 582 - -
Gabi4891g00080 1097 PANTHER PHOSPHOLIPASE D 156 1087 IPR015679 -
Gabi4891g00080 1097 SMART pld_4 463 490 IPR001736 GO:0003824
Gabi4891g00080 1097 SMART pld_4 894 921 IPR001736 GO:0003824
Gabi4891g00080 1097 CDD PLDc_vPLD1_2_yPLD_like_1 356 500 - -
Gabi4891g00080 1097 Pfam Phospholipase D Active site motif 463 490 IPR001736 GO:0003824
Gabi4891g00080 1097 CDD PH_PLD 180 326 - -
Gabi4891g00080 1097 PIRSF PLD_euk 32 608 IPR016555 GO:0004630|GO:0006654|GO:0048017
Gabi4891g00080 1097 PIRSF PLD_euk 679 1097 IPR016555 GO:0004630|GO:0006654|GO:0048017
Gabi4891g00080 1097 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 463 490 IPR001736 GO:0003824
Gabi4891g00080 1097 Gene3D Endonuclease Chain A 727 954 - -
Gabi4891g00080 1097 MobiDBLite consensus disorder prediction 621 640 - -
Gabi4891g00080 1097 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 894 921 IPR001736 GO:0003824
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gabi4891g00080 Gabi-Chr4891 684015 708973 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4891g00080 24 974 Phospholipase D Gene Family (Wang group) AT3G16785 72.385 0.0 1340