Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4891g00078 ATGTGTGGGGGTGCTATCATTTCTGATTTCATAGACGTGAACTTGAAGCGTAGCAGGAGATTCACACCCGAGAACCTCTGGTCTGAGCTAGACACTTTCTCTGACCTCGTTGGTTTCGACGCCACCTCCTCTTCTAAACACCAACCATCCCTCCACCACTTTGATCAACCAAAGCTGTCTCTTATTCCAAACAACAAAGTGGTGAAGGTGGAGAAAAAAATAGTTATTGCAGAAAAGGGAACAAGTAAGAATGGTGAGAATCAAAGTGAGGGTAAGGCTAAGCGAACTCGGAAGAATGTGTATAGGGGAATCAGGCAAAGGCCATGGGGCAAATGGGCTTCCGAGATAAGGGACCCACATAAGGGTGTACGTGTTTGGCTCGGAACCTTCAACACCGCCGAAGAAGCCGCCCGGGCCTACGACGGCGCCGCCAAACGCATCCGCGGAGACAAGGCCAAGCTCAACTTTCCCCACCATCCTGTCAAGAAGCGGTGCCTCAGCCCCGAGTTAACTCAGCCGAGTTATCAACTCACTGGTGAAGCCCAGGTCCAGGATCCTGAGTTGAAACATCAAATCTCGAGCCTGGAATCGTTCCTTGGTTTGGAGCACGAGCAGCCTCAGTCGTTCGTTGGTGAGTGGGACTCGCTTTACAGTGACACGTGGATGCTGGACGACGTCGTTATGCCCAACTGTCATCCGTTCTGA 705 0.5149 MCGGAIISDFIDVNLKRSRRFTPENLWSELDTFSDLVGFDATSSSKHQPSLHHFDQPKLSLIPNNKVVKVEKKIVIAEKGTSKNGENQSEGKAKRTRKNVYRGIRQRPWGKWASEIRDPHKGVRVWLGTFNTAEEAARAYDGAAKRIRGDKAKLNFPHHPVKKRCLSPELTQPSYQLTGEAQVQDPELKHQISSLESFLGLEHEQPQSFVGEWDSLYSDTWMLDDVVMPNCHPF 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4891g00078 234 SMART rav1_2 100 163 IPR001471 GO:0003700|GO:0006355
Gabi4891g00078 234 Gene3D AP2/ERF domain 100 158 IPR036955 GO:0003700|GO:0006355
Gabi4891g00078 234 MobiDBLite consensus disorder prediction 79 98 - -
Gabi4891g00078 234 ProSiteProfiles AP2/ERF domain profile. 100 157 IPR001471 GO:0003700|GO:0006355
Gabi4891g00078 234 PRINTS Ethylene responsive element binding protein signature 123 139 IPR001471 GO:0003700|GO:0006355
Gabi4891g00078 234 PRINTS Ethylene responsive element binding protein signature 101 112 IPR001471 GO:0003700|GO:0006355
Gabi4891g00078 234 Pfam AP2 domain 100 149 IPR001471 GO:0003700|GO:0006355
Gabi4891g00078 234 PANTHER DNA-BINDING DOMAIN 60 172 IPR044808 GO:0003700|GO:0009873
Gabi4891g00078 234 FunFam Ethylene-responsive transcription factor 2 99 158 - -
Gabi4891g00078 234 SUPERFAMILY DNA-binding domain 100 158 IPR016177 GO:0003677
Gabi4891g00078 234 CDD AP2 101 159 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4891g00078 Gabi-Chr4891 662173 663747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4891g00078 1 227 AP2-EREBP Transcription Factor Family AT3G16770 46.125 1.60e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi4891g00078 AP2 2.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4891g00078 K09286 - qsa:O6P43_021786 214.157