Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4891g00077 ATGAATTCCAACTATGGCAAATCCAACCCGCACAAACCTTCCTCCGTTTCACTCAACAACGTCAATTTCGATTTTGATTTGGGGATCGGATCCAATCGTCCCAAATCCCTAAACGATCAGAAAAACCCCAATCCCTCCTCTTATTCCTCTTATTCCTATTCCAATTCCACCACCACCACTTCCTCTGCCCAACCAAACAAACCATCTTGGACCCACCACCCCGCTCCGACTCAGTCGTCCGGGTTGCCGGGTGCACCCACTTCAATGGTTGGTGACATCTCTGGCAAGAGTTGGGGATCCACTCAACCTTCGGGTTCCAGTATTGGGATTGTTAATAATAAGAACCCCAATCTTTTTGGAGATTTGGTTACCTCTGCTTTGGGACAGGGTTCTAAAACTGCTCCTACCAATGTTCCTCTCAAAAATGCTTCCAAGGTATCATCAGCTCCCACACCCAACAAGACCACCTTTTCAATGGGAACTATGTCTGATTCTTTGCCCAAAACTGGTAACGCCCAACAAAGTAGTGCTGCTTGGGGTGGATCTTCTGGGAGTTTTGGTATTAATGCCAATAAAAGCCCCAGTCTTGGGGGTCGTGGTGGTGGTGCTGCATCTGGGAGTGGAACCGGTTCTATTAACAAAGATCCATTTAGTTCTTTGGCTGGTATTGGATCCAAGCAAACTGCTAGTCTTAATTCAGCTGCTAAAGACCAAAAGGTTGATTCTGCGGATTTTGGTTTTGGAGATTTTCAGAGTGCTTCCAAACCAAGCTCTACCACATTTCCATCAAGTGGTACTACGGGAATTGATGTTGATTTTACTGGATCAACTGCTTCGGATCAGACCCCACCTGTCCAGGCATCAGGTGGTGGTGGTGGTGATCCAATGGACATGTTTTTCACATCTTCCTCGGCCACAGCTGGTGGTGCTGTCGCCTCTGAAGGATTTGGAGGAAAGGTCTCTTCTGAAATGGATGATTGGGGTTTGGATTCCGAGTTTGGTGGGGGAGGCCATGATGTGGGTGGCACAACTACTGAGCTTGAAGGGCTTCCACCACCTCCTTCTGGGATATCAGGTTCCACAGCAAAAGGCAAAGGGGTGGACAGTTACAAGCAGGGGCAATTTGCTGATGCTATTAAGTGGCTTTCATGGTCTGTCATCCTTCTAGAGAAAGCTGGGGATAATGCAGGCACAGTGGAGGTTTTGTCATGCAGGGCTTCATGTTACAAGGAAGTTGGGGAGTATAAAAAGGCAGTGGCGGATTGTACAAAGGTTCTTGAAAACGATGAAACCAATGTATCTGTCCTCGTACAGCGAGCTCTCTTGTACGAGAGTATGGAAAAGTACAAACTTGGTGCGGAAGACCTGAGAACTGTGCTGAAGATTGATCCTGGGAATAGGATTGCTAGAAGTACCGTTCACCGGTTGGCTAAGATGGCCGAATAG 1446 0.4751 MNSNYGKSNPHKPSSVSLNNVNFDFDLGIGSNRPKSLNDQKNPNPSSYSSYSYSNSTTTTSSAQPNKPSWTHHPAPTQSSGLPGAPTSMVGDISGKSWGSTQPSGSSIGIVNNKNPNLFGDLVTSALGQGSKTAPTNVPLKNASKVSSAPTPNKTTFSMGTMSDSLPKTGNAQQSSAAWGGSSGSFGINANKSPSLGGRGGGAASGSGTGSINKDPFSSLAGIGSKQTASLNSAAKDQKVDSADFGFGDFQSASKPSSTTFPSSGTTGIDVDFTGSTASDQTPPVQASGGGGGDPMDMFFTSSSATAGGAVASEGFGGKVSSEMDDWGLDSEFGGGGHDVGGTTTELEGLPPPPSGISGSTAKGKGVDSYKQGQFADAIKWLSWSVILLEKAGDNAGTVEVLSCRASCYKEVGEYKKAVADCTKVLENDETNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPGNRIARSTVHRLAKMAE 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4891g00077 481 SMART tpr_5 359 392 IPR019734 GO:0005515
Gabi4891g00077 481 SMART tpr_5 433 466 IPR019734 GO:0005515
Gabi4891g00077 481 SMART tpr_5 399 432 IPR019734 GO:0005515
Gabi4891g00077 481 MobiDBLite consensus disorder prediction 133 210 - -
Gabi4891g00077 481 MobiDBLite consensus disorder prediction 93 112 - -
Gabi4891g00077 481 MobiDBLite consensus disorder prediction 251 286 - -
Gabi4891g00077 481 MobiDBLite consensus disorder prediction 133 192 - -
Gabi4891g00077 481 MobiDBLite consensus disorder prediction 1 26 - -
Gabi4891g00077 481 SUPERFAMILY TPR-like 363 471 IPR011990 GO:0005515
Gabi4891g00077 481 PANTHER OS03G0340700 PROTEIN 1 481 - -
Gabi4891g00077 481 MobiDBLite consensus disorder prediction 33 85 - -
Gabi4891g00077 481 MobiDBLite consensus disorder prediction 334 363 - -
Gabi4891g00077 481 MobiDBLite consensus disorder prediction 1 112 - -
Gabi4891g00077 481 Gene3D Tetratricopeptide repeat domain 359 480 IPR011990 GO:0005515
Gabi4891g00077 481 Pfam Tetratricopeptide repeat 434 465 IPR019734 GO:0005515
Gabi4891g00077 481 MobiDBLite consensus disorder prediction 251 297 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4891g00077 374 481 Calmodulin-binding Proteins AT3G25230 33.036 1.78e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4891g00077 - - pvu:PHAVU_003G107800g 604.364