Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4891g00074 ATGGCAGCTGGATTTGATAGCAGGCAAGAGAAGAAGAAGAAGATAGCCGTTCTCGGCATCTCTTCAATCCTTCTCGTGGCTATGGTAGCTTGCGTCGCCGTTGGTATAAGAGATGGCTCCCAAGCTGGTGGTGACGAAGGGAATGACTTACAAATCGCAAAACATCAAAAGAACGTTCAAGTTATCTGCGGTTCAACTGAATACAAAGAAACATGCAAGAAAAGCCTTGAGAAAGCATCAAACGAAACCACAGACATGAAAGAGCTTATCAAAGCCGCATTCAATGCCACTGCTGAGGAACTCCTCAAGCAAATTCAGAACTCCACTCTCTACAATGAGTTGAACAAGGACGACATGACCAAACAGGCTTTGGATATTTGCAAGGAAGTCCTCGGTTATGCCGTTGATGACATTCACAAATCCGTTCACATTTTGGATAGGTTTGAACTCAGCAAGCTAACTGAATATGCCTATGACCTCAAGGTTTGGCTCACGGGTACCCTCTCCCACCAACAAACTTGCTTGGATGGCTTTGAGAACACAACCACCGATGCTGGCAAAACCATGGCTAAAGCTCTCAACACCTCTTTGGAGCTCAGCAACAATGCTATTGATATAGTTAATAGCGTGTCCAGTTTATTCAAGGGTCTTGACTTGAGCGCATTCACCACCAGCGCCAACAACAGGAAGCTTCTCTCTCTGGTGAATGGTTTCCCTTCATGGATGAGTGAAACCCAAAGAAGTCTCCTTCATGCTGCTGGCCCCAAGGGAAGCGTTAAACCCGACGTTGTTGTGGCTAAAGATGGGTCTGGCCAATTCACAACACTTACTGAAGCTCTTAAACTTGTTCCCCCAAAGAACAAAAAACCTTTTGTGATTTACGTCAAGGAAGGTGTCTACAATGAATATGTTAGCTTGACCAAGCATATGACCTACGTCACCATCATCGGAGACGGTCCCACAAAGACCAGATTCACCGGCAGCAAAAACTATAAGGATGGTGTCCAAACTTACAACACCGCAACCTTCAGTGTGAACGCTGCTAACTTCATGGCTAAAGACGTTGGGTTCGAGAACTCAGCAGGATCAGAGAAGCACCAAGCTGTGGCACTTAGGGTAACAGCAGATAAGGCCGTGTTGTACAACTGCCACATGGATGGTTACCAAGACACACTGTACGTGCAATCACAACGCCAGTTCTACAGAGACTGTGTCATCACCGGCACCATCGACTTCGTCTTCGGTGACGCAGTTGGAGTGTTCCAGAACTGCAAGTTGATTGTGAGGAAACCATTGGCTAACCAGCAATGCATGGTGACAGCCGGTGGCAGGTCAAAAGTTGACAGCACCAGTGCACTTGTGTTCCAGAGCTGCCACTTCACCGGTGAGCCTGACGTGGCAACCTTGGAACGCAAGATCTCATATCTTGGAAGGCCATGGAGACTCTATTCCAAGGTTGTGATCATGGACTCTATGATTGATGACATTTTCCTACCACAAGGGTATATGGCATGGATGGGAAGTGCTAACAAGGACACGTGCACTTATTACGAGTACAATAATAAGGGTCCTGGTGCTAACACTGCCTCTAGAGTCACATGGCCACATGTTAAGAGCATAACTCCTCTTGAGGCTTCTGATTACTATCCAGGGAAGTTTTTTGAACTCGCTAACGCAACTCAACGTGATGCTTGGATCCTCGAATCTGGGGTACCTTACTCCCTTGGCCCCCTGATTCCCTTCCAGCCATTAATTTAA 1758 0.4681 MAAGFDSRQEKKKKIAVLGISSILLVAMVACVAVGIRDGSQAGGDEGNDLQIAKHQKNVQVICGSTEYKETCKKSLEKASNETTDMKELIKAAFNATAEELLKQIQNSTLYNELNKDDMTKQALDICKEVLGYAVDDIHKSVHILDRFELSKLTEYAYDLKVWLTGTLSHQQTCLDGFENTTTDAGKTMAKALNTSLELSNNAIDIVNSVSSLFKGLDLSAFTTSANNRKLLSLVNGFPSWMSETQRSLLHAAGPKGSVKPDVVVAKDGSGQFTTLTEALKLVPPKNKKPFVIYVKEGVYNEYVSLTKHMTYVTIIGDGPTKTRFTGSKNYKDGVQTYNTATFSVNAANFMAKDVGFENSAGSEKHQAVALRVTADKAVLYNCHMDGYQDTLYVQSQRQFYRDCVITGTIDFVFGDAVGVFQNCKLIVRKPLANQQCMVTAGGRSKVDSTSALVFQSCHFTGEPDVATLERKISYLGRPWRLYSKVVIMDSMIDDIFLPQGYMAWMGSANKDTCTYYEYNNKGPGANTASRVTWPHVKSITPLEASDYYPGKFFELANATQRDAWILESGVPYSLGPLIPFQPLI 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4891g00074 585 ProSitePatterns Pectinesterase signature 1. 287 306 IPR018040 -
Gabi4891g00074 585 ProSitePatterns Pectinesterase signature 2. 406 415 IPR033131 -
Gabi4891g00074 585 Gene3D - 259 578 IPR012334 -
Gabi4891g00074 585 Pfam Plant invertase/pectin methylesterase inhibitor 58 206 IPR006501 GO:0004857
Gabi4891g00074 585 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 210 IPR035513 -
Gabi4891g00074 585 CDD PMEI-like_3 62 212 - -
Gabi4891g00074 585 PANTHER PECTINESTERASE 22 566 - -
Gabi4891g00074 585 SMART PMEI_2 54 206 IPR006501 GO:0004857
Gabi4891g00074 585 SUPERFAMILY Pectin lyase-like 260 573 IPR011050 -
Gabi4891g00074 585 FunFam Pectinesterase 4 259 577 - -
Gabi4891g00074 585 NCBIfam pectinesterase inhibitor domain 53 209 IPR006501 GO:0004857
Gabi4891g00074 585 FunFam Pectinesterase 55 211 - -
Gabi4891g00074 585 Pfam Pectinesterase 262 554 IPR000070 GO:0030599|GO:0042545
Gabi4891g00074 585 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 211 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4891g00074 Gabi-Chr4891 610575 613104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4891g00074 1 578 Carbohydrate Esterase AT3G05610 44.387 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4891g00074 K01051 - gmx:100820068 872.848