Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4891g00073 ATGGACAACGTTGGCAAGCCCAAGGAAACCCGAAACGATGCACTCAGTGGTAAGATCATGTTAATCGCCATTGTCATTCTCTTCATAGTTATCATCATAATGCTTTGCCTTCACGTCTATATCCGCTGGTACCTCGTACGTGCTCGCCGCCGTCAACTCCTCAACCGCCCCCGCCTCAGCCACAGCCACAGCCGCCGCCGTGGCCCGCAGTTCGTCTTCTTCGTGAACCCCGCCACCCTTATGCTGACCTCCCGCGGCCTCGATGCCTCCGTAATCTCCTCCCTCCCCGTCTTCGCCTTCTCCACCAAGACCCACACGGAGGCGGTGGAATGCGCGGTTTGCTTGTCGGAGTTCAAGGATGGGGAAACGGGTCGGGTCCTGCCCCGATGCAACCACAGCTTCCATATTGACTGCATCGACATGTGGTTCCAGTCTCACTCCACCTGTCCACTTTGCAGGGCACCCGTGAAGCCCCCGCCCGAGACCCGACCCGAAGTAACTGTCACTGTGTGTGAACCGGAATCGGGTTCGAGTTCTGGGTGTTGCCAGTACGAAGGGGAAGAGCCGAACCGGACTGGACCGGCAGTTTCTTCTTCGTCATCCTCTACTGGCTTCGGGGATGAGTCGCAGTCGTCGTCACGGTCGCCGATGAGTCGCATGCTGTCGTTTAAGAGAATTCTCAGCAGAGAGAGGAAAGCAAGAGTTTCTCCGTCTTCGAATTGTGTCGTTGGGTGCAGCTCCATGGCCGAGTTAGATGCATAG 762 0.5709 MDNVGKPKETRNDALSGKIMLIAIVILFIVIIIMLCLHVYIRWYLVRARRRQLLNRPRLSHSHSRRRGPQFVFFVNPATLMLTSRGLDASVISSLPVFAFSTKTHTEAVECAVCLSEFKDGETGRVLPRCNHSFHIDCIDMWFQSHSTCPLCRAPVKPPPETRPEVTVTVCEPESGSSSGCCQYEGEEPNRTGPAVSSSSSSTGFGDESQSSSRSPMSRMLSFKRILSRERKARVSPSSNCVVGCSSMAELDA 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4891g00073 253 SMART FANCL_C_2 107 158 - -
Gabi4891g00073 253 CDD RING-H2_EL5-like 110 153 - -
Gabi4891g00073 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 159 IPR013083 -
Gabi4891g00073 253 FunFam RING-H2 finger protein ATL3 78 158 - -
Gabi4891g00073 253 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Gabi4891g00073 253 SUPERFAMILY RING/U-box 91 165 - -
Gabi4891g00073 253 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 12 158 IPR044675 -
Gabi4891g00073 253 SMART ring_2 111 152 IPR001841 -
Gabi4891g00073 253 MobiDBLite consensus disorder prediction 171 185 - -
Gabi4891g00073 253 MobiDBLite consensus disorder prediction 192 219 - -
Gabi4891g00073 253 Pfam Ring finger domain 110 153 IPR001841 -
Gabi4891g00073 253 MobiDBLite consensus disorder prediction 155 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4891g00073 Gabi-Chr4891 601734 602495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4891g00073 10 237 Rapid Response to Elicitors AT3G16720 47.893 3.58e-58 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4891g00073 - - pcin:129320593 219.164