Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4891g00056 ATGGACGACGCTCAGTACCCAAACAACCCTCCATCCTATGAACACGAAGATGCACCCATTCCCAACATCAAAATCCCCATTCCACCATCGCAAAGCACCACGGAGTTGCGTGCTCTCGATTGCAACCTTGCTTCCCTCTGCGAGCATGTCCAAATCGAAGGCTTCAACTCCGGCTCTTTCTCCGATATCGTTATCAATGCAATGGGTTCCACTTATCATCTCCATCGTCTTATCCTCTCCCGCAGTTCATATTTCAGGAACATGCTTCATGGGCCTTGGAAAGAAGCCAGTGCTCCTATTGTGACTCTGCATGTTGATGATAAGAATGTTAATGATGAGGCAATTGCAATGGCTTTGGCATATCTATATGGGCACTATCCTAAGCTTAATGATAATAATGCATTTCGTGTTCTTGCTGCTGCTTCCTTTCTTGATCTTCAGGATTTATGTGCAATATGTACAGATTTCATTATATCTGAGCTGTGGACTTCAAACTTCTTGGCTTATCAGGTGTTTGCGGAGAACCAAGACTATGGCATTCATGGGGAGCGTGTTAGAACTGCCTGTTGGGGCTACCTCTGTCAAAGTGGTGGCATGGAATTGAAAGAGGTGCTTCCTAAACTTTCATCTCAAACATTGCATGTATTACTGACTTCTAACGATCTTTGGATACCCAGTGAAGAGAAACGGTTTGAACTGGCTTTGCACACATTCTTGGCAAAAGGTGCCCACTGTAAGGTCGAACGTCCTGTGCTTGGAATTTCTGGTTCTGAGTCTGCAACTGGTATTCATTCTGATTCTGATAACACTAAGGGAAAAAGTGTAACTGATAGCTGCCCTAAAACGGGGTTGGAAACTGATATACGGAAAATGAGTCTTAAAAGTGATCTAAAGGACCCTAGCATTCCTAATCTTTTAGTTGAGCTTGCAGACTCTGTGGCAGACTGCAACCATGGAGTCTCTGTTTCCAATCAACGGGTTCAACAAGCTTCATTTGCCAGTTCATCAAACCTGAATGCAAGCCATCCTTGTGACATGGAAGGGCCTTCATTGGGTAATGCATTGTCTGATACAGATGGGATGCGAACATCAAGTTATGTTGAGATGCCTCTTGATGCTGGAGCAACTGGTCTGGGAGCCACTGGAGTGGGTATTGAAGGGCCTTCTGCTGAAGGATCTTGCTACAATTTGGATAACAATAGTTGCTTAGTTAGGGATCAATCAAGTCATTGCTTTTCATCGAATTCTTGTAATGGGCTCACATCCAGTGATTGGGGAAGATATGGAACGCCTTTGTTTTCATGGGGAGGCCAGGTTGCTGGTAGAAGACAGCTTAAAGCTCATCCCAGAGGAAATTTTGGAGGTCATGGAGATGAATACAATGCATTTCTTAATATATTTGAAGGGGATTCTCTTTTATATTGCAATATGTCTTTTGACGCACTTGTAATTGTTAGAAAGCAACTTGAAGAGTTGGGTTTCCCTTGCAAAGCTGTAAATGATGGTCTTTGGTTGCAGATGCTTCTTAGTCAGAGGGTGCAAGAAATTGCTGCTGATACGTGCAAAGTTTGTTCCCTTATGAGTATGGCTTGCACTTGCCAGAAGCAATTTGCATTTTCACATGGAGCTTCTACCACTGGTTCTTACATGCAAGAACATAATCAGAACAATATGGCTGGGAATGTGGGAAATATATATGTTGCTGAATCTTCTCCTGGTGAAAGAAATGGCCCTGTCAGACCTGTGCGGGTACATGTTAGAGGTGCTATTGATGGGCTTGCAGGAATTGGCCGTGGAACTACGTTTGTTCCAGCAGCTGCTTTGCCTCCTACACGTTTTGTCTTTTCTCGTGTACCATTTGGCGTAAGCAACAGAAACTACCCTCAATCTGCAGTCAATGATGATTCAGACACACGGGCTGACCACAATGGAGAACTTCCTGGGGATGGGTTGACAGCTTTGGTTGGGCTAAGTCAAGGAGGGAGTAACGGAACAAACATACATACAGAGCTAACACAAAGAGGATATGAAATGGGCTTGCAAAGCAGCATGTCTGGATCTACTGCTGGCGGTGCAAGTACTGGTGGCATTCCCATGCAGATGTTAGAGACACCAGAGCATACTGTTGGTATAGAATGGGAGAATGCCAACAGTTCTTCTATATCACTAGATTTGAAAACACCTTTAAACCATTTTCCTCCTTTTCGCTTTGGTGTGCATTTTGAGGATGTGCATAGGCTTGGTGATGGCCAGGTCAAGCATTCTCCAGAATTTTTCTATGCTGGTTCTTTATGGAAGGTCAGTGTACAGGCTTTTAATGATGAAGACCCCCAGGGACGGCGTACCCTTGGGTTGTTTCTTCACCGTCGGAAGGCAGAGATAACTGATATACATAGAAAGGTACATATGTATGTTGACTCGCGTGAAAAGGTGACTGCACGCTACCAGTTGACTTGCCCATCCAAGAGGGAAATGATGGTGTTTGGAAGCTTTAAACAAACAGGCACTCTTCTACCTAAAGCTCCTAAAGGATGGGGTTGGCGAACTGCTTTGCTATTTGATGAACTTGGTGATCTTCTCCAAAATGGGGCCCTAAGGGTCATTGCTGTTGTGCAGCTTGTTTGA 2625 0.4434 MDDAQYPNNPPSYEHEDAPIPNIKIPIPPSQSTTELRALDCNLASLCEHVQIEGFNSGSFSDIVINAMGSTYHLHRLILSRSSYFRNMLHGPWKEASAPIVTLHVDDKNVNDEAIAMALAYLYGHYPKLNDNNAFRVLAAASFLDLQDLCAICTDFIISELWTSNFLAYQVFAENQDYGIHGERVRTACWGYLCQSGGMELKEVLPKLSSQTLHVLLTSNDLWIPSEEKRFELALHTFLAKGAHCKVERPVLGISGSESATGIHSDSDNTKGKSVTDSCPKTGLETDIRKMSLKSDLKDPSIPNLLVELADSVADCNHGVSVSNQRVQQASFASSSNLNASHPCDMEGPSLGNALSDTDGMRTSSYVEMPLDAGATGLGATGVGIEGPSAEGSCYNLDNNSCLVRDQSSHCFSSNSCNGLTSSDWGRYGTPLFSWGGQVAGRRQLKAHPRGNFGGHGDEYNAFLNIFEGDSLLYCNMSFDALVIVRKQLEELGFPCKAVNDGLWLQMLLSQRVQEIAADTCKVCSLMSMACTCQKQFAFSHGASTTGSYMQEHNQNNMAGNVGNIYVAESSPGERNGPVRPVRVHVRGAIDGLAGIGRGTTFVPAAALPPTRFVFSRVPFGVSNRNYPQSAVNDDSDTRADHNGELPGDGLTALVGLSQGGSNGTNIHTELTQRGYEMGLQSSMSGSTAGGASTGGIPMQMLETPEHTVGIEWENANSSSISLDLKTPLNHFPPFRFGVHFEDVHRLGDGQVKHSPEFFYAGSLWKVSVQAFNDEDPQGRRTLGLFLHRRKAEITDIHRKVHMYVDSREKVTARYQLTCPSKREMMVFGSFKQTGTLLPKAPKGWGWRTALLFDELGDLLQNGALRVIAVVQLV 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4891g00056 874 MobiDBLite consensus disorder prediction 1 21 - -
Gabi4891g00056 874 ProSiteProfiles BTB domain profile. 61 131 IPR000210 GO:0005515
Gabi4891g00056 874 CDD MATH 748 872 IPR002083 GO:0005515
Gabi4891g00056 874 SUPERFAMILY POZ domain 55 159 IPR011333 -
Gabi4891g00056 874 Gene3D Potassium Channel Kv1.1; Chain A 32 194 IPR011333 -
Gabi4891g00056 874 Pfam BTB/POZ domain 55 159 IPR000210 GO:0005515
Gabi4891g00056 874 SMART BTB_4 61 161 IPR000210 GO:0005515
Gabi4891g00056 874 MobiDBLite consensus disorder prediction 628 647 - -
Gabi4891g00056 874 MobiDBLite consensus disorder prediction 258 281 - -
Gabi4891g00056 874 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN 19 874 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Gabi4891g00056 BTB 4.2e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4891g00056 - - gmx:100806711 1486.86