Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4891g00030 ATGTTTCACTGTCACCGCCTGAGAGCAATTCTCTCCCTCAAGGCTATCTCCGAATTGCCACAAACCCCAGAATGTTACCCTTTTCTGAAACCCCACAAATCACCAATCTTTCTCAACCTCTTGTCGACCACTTCAGATCAACAACCATCATCATTCACCATATCCTACCTCACAAACAATTGTGGTTTGTCACTTGAAACTGCTCGCAAAGCATACAAGCGCGTTCGTTTCGACACATCCCTGAAGCCCGATTCAGTCATCGCCTTCTTCAGAAACCACGGTTTCTCCATCTCCCAAATACACAGCATCATTGGTAGGGTACCTGAGCTACTTGCATGCGACCCCAACAAAAGGGTTTTGCCCAAGTTTGAATTTTTAGCCTCCAAAGGTGCTTCTTCCTCTGACATCGTTCTCATGGTCACTAAGAGCCCAGATTTCCTGCGTAAAAGCCTCGAGAATCACATAACCCCTGCCTTTGAATTGGCAAGGAGATTCTTTCCATCTGATGAAAGATTCATTGCTAGTGTAATTGGTTATCCCACTTTCCTTAGTGATGCTCGTGTGGAACCAAACGTGAAATTGTTGCTTGATGTTGGAGTGACACACTCCAACATTTACCATTTGCTTCGTACTAGGCCTTCTATACTATGCTCCTCTGATTTGAAGAAGGCCGTTGAGGAAGTTAAGGGATTGGGATTTGATCCTTCCAAATCGAGTTTTAGTGTAGCATTATTGGCCAAAAGGGCTATTACCAAATCCCAGTGGGATGCCAAAGTTGATGCCTTTAAGAATTGGGGTTGGTCCGAAGATGCAATTTCCCATGCATTTAGGAAGCATCCTAACTTTATGCTACGGTCTGCGGACAAAATCAATGCAGTGATCAGTTTTTGGGTTGATCAGCTTGGTTGGGATCCTTCAGTGCTTCTTGCATCACCAAATCTTTTTGGATTTAGTTTGGAGAAAAGGTTTATTCCAAGGGCTTCAGTTATCCAGTATCTTCTCTCCAAAGATATGATAAAGAAGGATGCTAGCTTGGCTACACCATTTGTATTGTCTGATAAGTTGTTCCTGCAGAAGTTTGTGAAATGTTTTGAGGAAGAGGAAGCATCTAGGCTATTAAGGCTATATCAGGGAGAATGTTAG 1143 0.4331 MFHCHRLRAILSLKAISELPQTPECYPFLKPHKSPIFLNLLSTTSDQQPSSFTISYLTNNCGLSLETARKAYKRVRFDTSLKPDSVIAFFRNHGFSISQIHSIIGRVPELLACDPNKRVLPKFEFLASKGASSSDIVLMVTKSPDFLRKSLENHITPAFELARRFFPSDERFIASVIGYPTFLSDARVEPNVKLLLDVGVTHSNIYHLLRTRPSILCSSDLKKAVEEVKGLGFDPSKSSFSVALLAKRAITKSQWDAKVDAFKNWGWSEDAISHAFRKHPNFMLRSADKINAVISFWVDQLGWDPSVLLASPNLFGFSLEKRFIPRASVIQYLLSKDMIKKDASLATPFVLSDKLFLQKFVKCFEEEEASRLLRLYQGEC 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4891g00030 380 PANTHER CGI-12 PROTEIN-RELATED 50 367 IPR003690 GO:0003690|GO:0006355
Gabi4891g00030 380 FunFam Mitochondrial transcription termination factor-like 151 368 - -
Gabi4891g00030 380 Pfam mTERF 88 234 IPR003690 GO:0003690|GO:0006355
Gabi4891g00030 380 Pfam mTERF 254 356 IPR003690 GO:0003690|GO:0006355
Gabi4891g00030 380 Gene3D Transcription termination factor 3, mitochondrial 168 369 IPR038538 -
Gabi4891g00030 380 SMART mt_12 305 339 IPR003690 GO:0003690|GO:0006355
Gabi4891g00030 380 SMART mt_12 101 132 IPR003690 GO:0003690|GO:0006355
Gabi4891g00030 380 SMART mt_12 273 304 IPR003690 GO:0003690|GO:0006355
Gabi4891g00030 380 SMART mt_12 137 167 IPR003690 GO:0003690|GO:0006355
Gabi4891g00030 380 SMART mt_12 206 234 IPR003690 GO:0003690|GO:0006355
Gabi4891g00030 380 SMART mt_12 173 201 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4891g00030 Gabi-Chr4891 232840 234793 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Gabi4891g00030 mTERF 1.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4891g00030 K15031 - gmx:102666622 360.533