Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4891g00029 ATGGATAACGTTGGTGGCAGTTCCTCTAATAGTGCTGGCATCAAGGAACAAGACCGGTTGTTGCCAATTGCCAATGTTGGCCGCATCATGAAACAGATTTTGCCTCAGAATGCAAAAATCTCGAAGGAATCGAAGGAAACAATGCAAGAATGTGTGTCAGAATTCATAAGCTTTGTGACAAGTGAGGCATCAGAGAAGTGTAGGAAGGAAAGGAGGAAGACAGTGAACGGGGATGACATATGCTGGGCCTTGGGAACACTAGGTTTTGATGATTATGCAGAGCCAATGAGAAGGTATTTGCACAGATACAGAGAACTTGAGGTAGAAAGAGGAAATAGCCCTGAAGAGAAGGATGAACTATTTAAGTTGCCTCCTAGAGGAACTAGGTAG 390 0.4385 MDNVGGSSSNSAGIKEQDRLLPIANVGRIMKQILPQNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALGTLGFDDYAEPMRRYLHRYRELEVERGNSPEEKDELFKLPPRGTR 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4891g00029 129 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 20 84 IPR003958 -
Gabi4891g00029 129 Gene3D Histone, subunit A 10 123 IPR009072 GO:0046982
Gabi4891g00029 129 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 8 112 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gabi4891g00029 129 SUPERFAMILY Histone-fold 17 116 IPR009072 GO:0046982
Gabi4891g00029 129 FunFam Nuclear transcription factor Y subunit B-3 9 123 - -
Gabi4891g00029 129 ProSitePatterns NF-YB/HAP3 subunit signature. 51 67 IPR003956 GO:0005634|GO:0006355|GO:0043565
Gabi4891g00029 129 PRINTS CCAAT-binding transcription factor subunit A signature 86 104 - -
Gabi4891g00029 129 PRINTS CCAAT-binding transcription factor subunit A signature 67 85 - -
Gabi4891g00029 129 PRINTS CCAAT-binding transcription factor subunit A signature 48 66 - -
Gabi4891g00029 129 MobiDBLite consensus disorder prediction 107 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4891g00029 Gabi-Chr4891 224880 225359 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4891g00029 11 112 CCAAT-HAP3 Transcription Factor Family AT2G47810 77.451 2.47e-57 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gabi4891g00029 CBFD_NFYB_HMF 3.7e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4891g00029 K08065 - gmx:100794513 214.542