Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4891g00014 ATGGAGCGGTACGGCCGAGCCAGCGAAGGGTCGCAGTCTGATCCGTCGCCGGAATGGACCGTCACCGGCGGAGAGACGGGCCTTGAAGAGTCTGTGTGGGGACCGGGATTGGGTGTTGGCGAATCGTACCCTCAACGACCCGATGAGGCTGATTGTATCCACTTTCTGAGAACAGGTTATTGCGGTTATGGCCCGCGGTGTCGGTTCAATCATCCCCATGACCGTGGCGCGGTTATTGGAGCTGCGAGGACTGGAGTGGAGTATCCAGAACGAGTAGGACAGCCTGTGTGCCAGTATTATATGAGGACAAGATCCTGCAAATTTGGTGCATCGTGCAAGTACCACCATCCTAGGCAGGCAGCAGGAACTGCTACCCCCGTGTCACTAAATTATTATGGATATCCATTGAGAATGGGTGAGAAAGAGTGTTCCTATTATGTGAAGACGGGACAATGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCACAGCCTGCGGGCATCCAAATTCCAGCAGCACAAGTTCCCCCAGTTTCACCTCTGCCTGTACCAGTACCTTCACCAATGTATCCAACTGTACAGCCTCCATCTGGTCCTTCATCACAACAATATGGTTTACTGGTGGCAAGGCCGCCTCTGCTACCTGGCTCATTAGTCCATGGCCCCTATGGGCCTGTGGTAGTGTCCCCTGCCATGCTCCCCTTTTCAGGCTGGGGTCCTTATCAGGGTCCTGCATCAAGCCCTGTACTTCCTTCTAGTACTCCGTCTAATGTTGGTTCAACGCAACCTTATGGGATAACCCATCTACCTTCGTTGGCGACTGCCTATGCTGGTCCTTATCAACCTTCTGATTCCTCCTATGCTGGTCCTTATCAACCTTCTGATTCCTCAATTGGTCCTTTGGGCAGTAGTCAGAAGGAGCACTCATTTCCAGAAAGGCCTGATCAACCAGAATGTCATTATTACATGAAAACAGGGGAGTGTAAATTTGGTCCATCATGTAGATATCATCATCCACCTGATATGAATGCATCAAGAGTGAATGTGAACCTTAGTCCTGTGGGTCTTCCTTTGCGCCCGGGAGCAGCACTTTGTACTCATTATACACAGCGTGGAATTTGTAAGTTTGGTTCTGCTTGCAAATTTGATCATCCTATGGGATCACTAAGATATAGTCCATCTGCTTCTTCCCTTGCTGATATGCCGGTTGCACCCTATCCTGTTGGTTCCACAATTGGTACACTTGCCCCATCATCTTCATCGTCAGAGTTGCGGCCTGAACTTGCCTCAGGATCAAACAAGGAGTCTGTTTCATCTAGAATGTCTTCATCAATGAGCACATCGACTGAATCAGTTGGCTTGACCTCGTCAACTATTGGACCCATTTCTCAATCAAGCACCCAACCATCTGCTCAGAGTTCAAGTCCTTTAGCAACCACCAATGCCACCACGAGTAGCACTGTCTCTCACACCTCAAGCTAA 1482 0.496 MERYGRASEGSQSDPSPEWTVTGGETGLEESVWGPGLGVGESYPQRPDEADCIHFLRTGYCGYGPRCRFNHPHDRGAVIGAARTGVEYPERVGQPVCQYYMRTRSCKFGASCKYHHPRQAAGTATPVSLNYYGYPLRMGEKECSYYVKTGQCKFGATCKFHHPQPAGIQIPAAQVPPVSPLPVPVPSPMYPTVQPPSGPSSQQYGLLVARPPLLPGSLVHGPYGPVVVSPAMLPFSGWGPYQGPASSPVLPSSTPSNVGSTQPYGITHLPSLATAYAGPYQPSDSSYAGPYQPSDSSIGPLGSSQKEHSFPERPDQPECHYYMKTGECKFGPSCRYHHPPDMNASRVNVNLSPVGLPLRPGAALCTHYTQRGICKFGSACKFDHPMGSLRYSPSASSLADMPVAPYPVGSTIGTLAPSSSSSELRPELASGSNKESVSSRMSSSMSTSTESVGLTSSTIGPISQSSTQPSAQSSSPLATTNATTSSTVSHTSS 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4891g00014 493 MobiDBLite consensus disorder prediction 1 42 - -
Gabi4891g00014 493 ProSiteProfiles Zinc finger C3H1-type profile. 313 341 IPR000571 GO:0046872
Gabi4891g00014 493 MobiDBLite consensus disorder prediction 415 493 - -
Gabi4891g00014 493 MobiDBLite consensus disorder prediction 244 264 - -
Gabi4891g00014 493 PANTHER PROTEIN PHOSPHATASE RELATED 38 421 - -
Gabi4891g00014 493 Gene3D - 362 392 - -
Gabi4891g00014 493 ProSiteProfiles Zinc finger C3H1-type profile. 137 165 IPR000571 GO:0046872
Gabi4891g00014 493 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Gabi4891g00014 493 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 118 IPR000571 GO:0046872
Gabi4891g00014 493 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 164 IPR000571 GO:0046872
Gabi4891g00014 493 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 362 386 IPR000571 GO:0046872
Gabi4891g00014 493 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 315 340 IPR000571 GO:0046872
Gabi4891g00014 493 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 72 IPR000571 GO:0046872
Gabi4891g00014 493 ProSiteProfiles Zinc finger C3H1-type profile. 359 387 IPR000571 GO:0046872
Gabi4891g00014 493 SUPERFAMILY CCCH zinc finger 362 390 IPR036855 GO:0046872
Gabi4891g00014 493 SUPERFAMILY CCCH zinc finger 137 165 IPR036855 GO:0046872
Gabi4891g00014 493 SUPERFAMILY CCCH zinc finger 48 74 IPR036855 GO:0046872
Gabi4891g00014 493 MobiDBLite consensus disorder prediction 283 316 - -
Gabi4891g00014 493 MobiDBLite consensus disorder prediction 246 264 - -
Gabi4891g00014 493 Gene3D - 44 125 - -
Gabi4891g00014 493 Gene3D - 303 355 - -
Gabi4891g00014 493 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Gabi4891g00014 493 SMART c3hfinal6 359 386 IPR000571 GO:0046872
Gabi4891g00014 493 SMART c3hfinal6 91 118 IPR000571 GO:0046872
Gabi4891g00014 493 SMART c3hfinal6 313 340 IPR000571 GO:0046872
Gabi4891g00014 493 SMART c3hfinal6 139 164 IPR000571 GO:0046872
Gabi4891g00014 493 MobiDBLite consensus disorder prediction 283 304 - -
Gabi4891g00014 493 ProSiteProfiles Zinc finger C3H1-type profile. 91 119 IPR000571 GO:0046872
Gabi4891g00014 493 SUPERFAMILY CCCH zinc finger 92 119 IPR036855 GO:0046872
Gabi4891g00014 493 Gene3D - 126 170 - -
Gabi4891g00014 493 SUPERFAMILY CCCH zinc finger 316 341 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4891g00014 Gabi-Chr4891 105461 110320 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4891g00014 1 461 C2H2 Transcription Factor Family AT5G18550 54.008 8.42e-148 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi4891g00014 zf-CCCH 3.3e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4891g00014 - - gmx:100789405 734.947