Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4891g00012 ATGTCCACCTCTAGAACCTCAGATACATCCTTCAAAGGATATGAACCCAATCAAACCCAAATGTGTCTATCTCTTCTTCAACGCAATACATCAACTCCTTCTGGTGAAAGAAGGGGGAGAAGGAAGCAAGCAGAACCGGGTAGGTTTCTTGGGGTGAGAAGGCGTCCTTGGGGTAGATATGCTGCTGAAATTAGAGACCCTACAACTAAAGAAAGGCATTGGCTTGGCACATTTGACACTGCTCAAGAAGCTGCTCTTGCTTATGACAGAGCTGCTCTTTCCATGAAAGGCAACCAAGCAAGAACCAACTTTGTTTACTCTGACAATATCAATTTTCACAATCTTCTTTCTCCTATGGATGTTCAAGCTCTCTTGCCACCTTCACAGTTCATCACTAACACTCAGAGCAAACAACCAACCAATCAAAATAGCCAGCCTCAGCTTAATACTTCCCACGGTGAAAAACCTCTCTCTCCATTGAACAATGACATGTGTGTTGAAACTGCTGCTCATGGATCAGTTCAGGATGATAGTTTCTTCTTTCCCAATGATTCTAACTCGGGCTATCTGGAATGCATAGTTCCTGATAATTGTTTCAGGCCTGCTTCCAGTACCAACAGTTCAAACTCCAGAAAGAGCAATGTTAGCTCCGTTAACACAAGCTTCATGGAGAGTCAATCAAATCTTGACATGGCTTCATTCTCACAAGAAGCCATGAAGATGCCACCAAGGGCTTCTAACTTTTCAGATTTTTCTTATCCAAGTGAACTGAGTCAAGGATTATGGGATGATCAGCATTCATGGGATTGGGATTCTAGTGAACTTTCAGCTATATTTAATAACCCATTGAGGGTTGAAGATGGGTGCATGGATACACTGTATCCTATCACTGACAGTCCAAGCTATGGGCTAATGAATCAAGCTGCTTCATCAAGTACCTTTTGTCCATCACTTCCACCCTTTGGGGACGTAGACTTGGGATACCCACTCTTCTGA 996 0.4307 MSTSRTSDTSFKGYEPNQTQMCLSLLQRNTSTPSGERRGRRKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSMKGNQARTNFVYSDNINFHNLLSPMDVQALLPPSQFITNTQSKQPTNQNSQPQLNTSHGEKPLSPLNNDMCVETAAHGSVQDDSFFFPNDSNSGYLECIVPDNCFRPASSTNSSNSRKSNVSSVNTSFMESQSNLDMASFSQEAMKMPPRASNFSDFSYPSELSQGLWDDQHSWDWDSSELSAIFNNPLRVEDGCMDTLYPITDSPSYGLMNQAASSSTFCPSLPPFGDVDLGYPLF 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4891g00012 331 MobiDBLite consensus disorder prediction 132 162 - -
Gabi4891g00012 331 FunFam Ethylene-responsive transcription factor 2 48 106 - -
Gabi4891g00012 331 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Gabi4891g00012 331 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Gabi4891g00012 331 MobiDBLite consensus disorder prediction 132 157 - -
Gabi4891g00012 331 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Gabi4891g00012 331 MobiDBLite consensus disorder prediction 29 48 - -
Gabi4891g00012 331 Gene3D AP2/ERF domain 48 106 IPR036955 GO:0003700|GO:0006355
Gabi4891g00012 331 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 34 240 - -
Gabi4891g00012 331 MobiDBLite consensus disorder prediction 34 48 - -
Gabi4891g00012 331 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Gabi4891g00012 331 SUPERFAMILY DNA-binding domain 49 106 IPR016177 GO:0003677
Gabi4891g00012 331 Pfam AP2 domain 51 97 IPR001471 GO:0003700|GO:0006355
Gabi4891g00012 331 CDD AP2 48 104 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4891g00012 Gabi-Chr4891 101968 103011 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4891g00012 1 201 AP2-EREBP Transcription Factor Family AT5G18560 47.809 1.86e-58 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi4891g00012 AP2 1.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4891g00012 - - gmx:100812047 472.241