Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4891g00004 ATGGGTGGGTGTTTTCCTTGTTTTCGATCATCCAACGAGGAAGACACTGGGGTGAAGAAGCAAGTGCCCAAGATAAATTCTTTTAAAGAAGCTTCAGTTGTTCAGTCTCACCATCCCTCCAGGGTTAGCTCAGATAAATTAAAACTACGGAGTGTCTCAGATCCTAAGAAGGAACCGCCAGTTCCGAAGGATGGGCCAACAGCCAATATTGCTGCACAAATATTTACATTCCGAGAGCTTGCAGCTGCTACAAAGAATTTTAGACCAGAATGTTTATTAGGTGAAGGTGGCTTTGGGCGTGTATACAAAGGTCACCTTGAGAGCACTGGCCAATTAGTTGCTGTAAAACAGCTTGATCGAAATGGACTCCAAGGAAATCGAGAATTTCTGGTGGAGGTTCTCATGCTTAGCCTCTTGCATCACCCAAATCTTGTGAACTTAATTGGTTATTGTGCTGATGGTGATCAGCGGTTACTTGTTTACGAATTTATGCCGTTGGGGTCTTTGGAGGATCGCTTACATGATCTTCCTCCTGACAAGGAGTCCCTGGATTGGAACACTAGGATGAAAATAGCAGCTGGTGCAGCAAAGGGATTGGAATATTTGCATGACAAGGCAAATCCCCCTGTTATATATAGAGACTTAAAATCATCCAACATCCTGCTAGATGAGGGTTTTCATCCTAAGTTATCGGATTTTGGGTTAGCAAAACTTGGTCCGGTTGGTGATAAGACTCATGTATCCACAAGAGTAATGGGAACATATGGTTATTGTGCCCCAGAATATGCTATGACTGGGCAACTAACTCTCAAGTCCGATGTGTACAGTTTTGGAGTGGTATTCCTCGAACTTATTACAGGGCGCAAGGCTATTGATAATACACGTGCACCTGGAGAGCATAATCTCGTTGCATGGGCAAGACCTCTTTTTAAAGACCGTAGGAAGTTCCCAAAAATGGCAGACCCTCTACTTGATGGGCGTTATCCAATGCGAGGACTGTATCAAGCACTTGCAGTGGCAGCAATGTGTTTGCAAGAACAAGCTGCTACAAGGCCTCTTATTGGGGATGTTGTGACTGCTCTCACATACCTGGCCTCACAAACATATGACCCAAATGGCAATGCAACCACTCAGTCTAACAGAGTTGGTCCATCACTATCAACCCCGAGGAATCATCGAGATGGAATGAATAGGGATACAAGTGAGTTAGGAAGGAGTGAAAGTGTTGGTGGGTCAGGGTCAGCGAGGAAATGGGTATTGGATGATGTTGAAACACAGGAATCTCACAAAGACAGCCCTGTAAATAGTGCAAGAGGCAGAGAAACACGACACCTGGACAGAGAACGTGCAGTTGCAGAGGCAAAAGTGTGGGGTGAGAATTGGAGAGAAAAGAAGAGGGTAAATGCAATGGGTAGCTTTGACACTACAAACGAGTGA 1437 0.4482 MGGCFPCFRSSNEEDTGVKKQVPKINSFKEASVVQSHHPSRVSSDKLKLRSVSDPKKEPPVPKDGPTANIAAQIFTFRELAAATKNFRPECLLGEGGFGRVYKGHLESTGQLVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDRLHDLPPDKESLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGFHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRAPGEHNLVAWARPLFKDRRKFPKMADPLLDGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNGNATTQSNRVGPSLSTPRNHRDGMNRDTSELGRSESVGGSGSARKWVLDDVETQESHKDSPVNSARGRETRHLDRERAVAEAKVWGENWREKKRVNAMGSFDTTNE 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4891g00004 478 MobiDBLite consensus disorder prediction 369 391 - -
Gabi4891g00004 478 MobiDBLite consensus disorder prediction 1 66 - -
Gabi4891g00004 478 Gene3D Transferase(Phosphotransferase) domain 1 164 382 - -
Gabi4891g00004 478 ProSiteProfiles Protein kinase domain profile. 87 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4891g00004 478 FunFam Serine/threonine-protein kinase PBS1 164 380 - -
Gabi4891g00004 478 Pfam Protein kinase domain 92 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4891g00004 478 Gene3D Phosphorylase Kinase; domain 1 62 163 - -
Gabi4891g00004 478 ProSitePatterns Protein kinases ATP-binding region signature. 93 116 IPR017441 GO:0005524
Gabi4891g00004 478 SMART serkin_6 87 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4891g00004 478 PANTHER OS07G0668900 PROTEIN 4 373 - -
Gabi4891g00004 478 MobiDBLite consensus disorder prediction 420 448 - -
Gabi4891g00004 478 CDD STKc_IRAK 93 362 - -
Gabi4891g00004 478 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Gabi4891g00004 478 MobiDBLite consensus disorder prediction 369 448 - -
Gabi4891g00004 478 FunFam Serine/threonine-protein kinase PBS1 60 163 - -
Gabi4891g00004 478 MobiDBLite consensus disorder prediction 41 61 - -
Gabi4891g00004 478 SUPERFAMILY Protein kinase-like (PK-like) 70 361 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4891g00004 Gabi-Chr4891 26230 30606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4891g00004 4 466 Glycoside Hydrolase AT3G07070 56.559 9.13e-170 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Gabi4891g00004 Pkinase 2.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4891g00004 - - tcc:18603450 797.349