Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4891g00003 ATGGGGAAGCCTTTCGACAATCAGGTTTCGAACTCCTCAAATTCCGAAGAGGAGGAGGACGCCAACGCTCAGATCGAAGAGGATGACGAGGAGCTCGAAGCTGTGGCTCGCTCCACTAGCTCTGACGGCGAGGATAATGTGCCAGATGAAGAAGAAGCTGCTGGAGATGGCGACGAGGATAAACCGGATGAAAGCAATGTTGATAATGAAATTAGCAAGCGTGAGAAGACCAGATTAAAAGAAATGGAAAAATTGAAGAAACAGAAGATTCAGGAGATATTGGATGAACAAAATGCAACCATTGATGCTGATATGAACAATAGGGGAAAGGGCCGATTGAAGTATCTTTTACAGCAAACTGAGCTATTTGCTCATTTTGCCAAAGGTGATCAATCTTCATCTCAAAAGAAGTCAAGGGGAAGGGGACGCCATGCATCAAAAGTGACTGAAGAAGAGGAAGATGAAGAATACCTTAAAGAAGAAGAAGTTGGTTTAGCAAACACGCGGCTGTTGACTCAACCATCATGTATCCAAGGAAAGATGAGGGATTACCAACTTGCGGGACTAAACTGGCTCATACGACTATATGAGAATGGAATAAATGGAATTCTGGCAGATGAAATGGGGCTTGGTAAAACCTTGCAAACTATATCTTTGTTGGCCTATTTACATGAGTTCAGAGGAATAACGGGTCCTCATATGGTGGTTGCTCCAAAATCAACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTATTTTACGTGCAGTAAAGTTCCTTGGTAACCCTGATGAAAGGAACCATATTAGAGAGGAGTTATTGGTTGCTGGTAAGTTTGATGTGTGCGTTACAAGTTTTGAAATGGTAATCAAGGAGAAGTCTACTTTACGTCGATTCAGTTGGCGTTACATAATTATTGATGAAGCTCATCGAATCAAGAATGAGAACTCCCTCCTTTCCAAAACGATGAGGCTATACAATACAAACTATCGACTTCTTATAACTGGCACACCATTACAGAACAATCTTCATGAACTCTGGGCTCTTCTCAACTTTCTTCTGCCTGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAATTACACAAGGTCCTCCGTCCATTTCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGTTTGCCACCAAAAAAGGAAACCATTCTCAAAGTAGGCATGTCGCAAATGCAGAAACAGTATTATAGAGCATTACTGCAGAAGGATCTTGAGGTTGTCAATGCTGGTGGAGAACGGAAACGCCTACTAAATATAGCAATGCAACTACGTAAATGTTGTAATCATCCATATCTCTTCCAAGGTGCTGAACCTGGTCCTCCGTATTCAACAGGAGACCATCTGATTACAAATGCTGGTAAAATGGTTCTACTGGATAAGTTACTTCCTAAACTAAAAGAACGTGATTCTAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTTGAAGATTATTTGATGTATTGCGGATATCAATATTGCCGCATAGATGGCAACACTGGCGGAGAAGATCGTGATGCTTCCATTGAGGCTTTCAACAAACCAGGAAGTGAGAAATTTGTCTTCTTGTTATCTACTCGGGCTGGAGGTCTTGGCATTAATCTTGCTACTGCTGATGTTGTCATTCTTTATGACAGTGACTGGAACCCACAAGCTGACTTGCAAGCTCAGGATCGAGCTCATAGAATTGGTCAAAAGAAAGAAGTTCAAGTTTTCCGATTTTGCACTGAGTATACAATTGAGGAAAAAGTCATAGAAAGGGCTTACAAAAAGCTTGCACTGGATGCATTGGTGATTCAGCAAGGTCGATTAGCTGAGCAAAAGACTGTAAATAAAGATGAGTTGATTCAAATGGTTAGATTTGGTGCTGAAATGGTTTTTAGTTGCAAGGACAGTACAATTACGGACGAGGATATTGACAGAATTATTGCTAAAGGAGAGGAAGCAACAGCTGAGCTTGATGCTAAGATGAAGAAATTTACTGAAGATGCTATCAAATTTAAGATGGATGACACTGCTGAGTTGTATGATTTTGATGATGAGAAGGATGAGAACAAAGTTGACTTCAAAAAACTCGTGAGTGACAACTGGGTTGAGCCACCAAAAAGAGAAAGGAAGCGCAATTACTCAGAATCTGAATACTTTAAGCAAACAATGCGGCAAGGTGGTCCTATTAAACCAAAAGGGCCCCGTATTCCTAAGATGCCTCCATTGCATGATTTCCAGTTTTTCAACACTCAAAGGCTGACTGAGCTGTATGAAAAGGAAGTTCGCTATCTTATGCAAACCCATCAGAAGAATCAGGTAAAAGACTCAATAGATGTTGATGAACAAGAAGAGGTGGGAGACCCATTGACTGCCGAAGAGTTGGAGGAAAAGGAGCACCTGCTAGAGGAGGGATTTTCATCATGGAGCCGGAAGGATTTTAATGCTTTCATTAGGGCCTGTGAAAAATATGGCCGAAATGATATAAAAAACATTGCTTCTGAGATGGAAGGAAAAACAGAGGAGGAAGTTGAAAGATATGCAAAAGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGATAGAATTATTAAAAACATTGAAAGAGGGGAGGTGAGAATATCTCGGAAAGATGAGATCATGAAAGCTATTGGGAAGAAGTTGGACCGCTACAAGAATCCTTGGCTTGAGTTGAAGATACAGTATGGACAAAACAAAGGAAAGTTATTCAATGAAGAATGTGACCGATTCATGATATGCATGGTTCACAAACTTGGCTATGGGAATTGGGATGAATTGAAGGCAGCATTTCGAACATCACCCTTGTTTCGTTTTGATTGGTTTTTAAAGTCTCGCACAACACAGGAACTAGCAAGGAGGTGTGACACCCTCGTTCGGCTGGTAGAGAAGGAAAACCAGGAATATGAGGAGAGGGAGAGACAAGCTCGTAAAGAGAAGAAACTTGCCAACAAGAGTATGACCCCATCAAAGCGTGCCTTGCCAAGACAGACGGATAGTCCATCTATGAAGAAGCGGAAGCAGTTAACTATGGATGACTATATAAGCTCGGGGAAGAGGAGAAAATAA 3171 0.4096 MGKPFDNQVSNSSNSEEEEDANAQIEEDDEELEAVARSTSSDGEDNVPDEEEAAGDGDEDKPDESNVDNEISKREKTRLKEMEKLKKQKIQEILDEQNATIDADMNNRGKGRLKYLLQQTELFAHFAKGDQSSSQKKSRGRGRHASKVTEEEEDEEYLKEEEVGLANTRLLTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPILRAVKFLGNPDERNHIREELLVAGKFDVCVTSFEMVIKEKSTLRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYSTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYCGYQYCRIDGNTGGEDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELIQMVRFGAEMVFSCKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDENKVDFKKLVSDNWVEPPKRERKRNYSESEYFKQTMRQGGPIKPKGPRIPKMPPLHDFQFFNTQRLTELYEKEVRYLMQTHQKNQVKDSIDVDEQEEVGDPLTAEELEEKEHLLEEGFSSWSRKDFNAFIRACEKYGRNDIKNIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEVRISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLFNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFLKSRTTQELARRCDTLVRLVEKENQEYEERERQARKEKKLANKSMTPSKRALPRQTDSPSMKKRKQLTMDDYISSGKRRK 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4891g00003 1056 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 486 637 IPR001650 -
Gabi4891g00003 1056 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 744 834 IPR036306 GO:0003677|GO:0006338|GO:0031491
Gabi4891g00003 1056 FunFam ISWI chromatin-remodeling complex ATPase CHR11 402 694 - -
Gabi4891g00003 1056 Gene3D - 402 694 IPR027417 -
Gabi4891g00003 1056 Gene3D iswi atpase 887 919 - -
Gabi4891g00003 1056 Gene3D - 920 1023 - -
Gabi4891g00003 1056 MobiDBLite consensus disorder prediction 1003 1020 - -
Gabi4891g00003 1056 Pfam HAND 745 827 IPR015194 GO:0003677|GO:0006338|GO:0031491
Gabi4891g00003 1056 Pfam SNF2-related domain 194 461 IPR000330 GO:0005524|GO:0140658
Gabi4891g00003 1056 Coils Coil 989 1020 - -
Gabi4891g00003 1056 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 87 1041 - -
Gabi4891g00003 1056 CDD SF2_C_SNF 482 607 - -
Gabi4891g00003 1056 Gene3D - 832 886 - -
Gabi4891g00003 1056 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 193 358 IPR014001 -
Gabi4891g00003 1056 MobiDBLite consensus disorder prediction 19 33 - -
Gabi4891g00003 1056 Gene3D ISWI, HAND domain 733 831 IPR036306 GO:0003677|GO:0006338|GO:0031491
Gabi4891g00003 1056 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 832 886 - -
Gabi4891g00003 1056 SUPERFAMILY Homeodomain-like 887 1009 IPR009057 -
Gabi4891g00003 1056 MobiDBLite consensus disorder prediction 45 65 - -
Gabi4891g00003 1056 MobiDBLite consensus disorder prediction 1 18 - -
Gabi4891g00003 1056 FunFam ISWI chromatin-remodeling complex ATPase CHR11 920 1024 - -
Gabi4891g00003 1056 SMART helicmild6 512 596 IPR001650 -
Gabi4891g00003 1056 CDD SANT 835 879 IPR001005 -
Gabi4891g00003 1056 Pfam SLIDE 889 999 IPR015195 GO:0003677|GO:0005634|GO:0006338
Gabi4891g00003 1056 Coils Coil 72 99 - -
Gabi4891g00003 1056 Pfam Helicase conserved C-terminal domain 484 596 IPR001650 -
Gabi4891g00003 1056 MobiDBLite consensus disorder prediction 1032 1056 - -
Gabi4891g00003 1056 SUPERFAMILY Homeodomain-like 835 885 IPR009057 -
Gabi4891g00003 1056 MobiDBLite consensus disorder prediction 66 80 - -
Gabi4891g00003 1056 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 398 679 IPR027417 -
Gabi4891g00003 1056 CDD DEXHc_SMARCA1_SMARCA5 178 398 IPR044754 GO:0005524
Gabi4891g00003 1056 SMART ultradead3 177 369 IPR014001 -
Gabi4891g00003 1056 MobiDBLite consensus disorder prediction 127 155 - -
Gabi4891g00003 1056 FunFam ISWI chromatin-remodeling complex ATPase CHR11 733 831 - -
Gabi4891g00003 1056 MobiDBLite consensus disorder prediction 1 80 - -
Gabi4891g00003 1056 SMART sant 934 995 IPR001005 -
Gabi4891g00003 1056 SMART sant 832 881 IPR001005 -
Gabi4891g00003 1056 MobiDBLite consensus disorder prediction 1003 1056 - -
Gabi4891g00003 1056 Coils Coil 15 38 - -
Gabi4891g00003 1056 Gene3D - 182 397 IPR038718 -
Gabi4891g00003 1056 ProSiteProfiles SANT domain profile. 831 883 IPR017884 -
Gabi4891g00003 1056 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 396 IPR027417 -
Gabi4891g00003 1056 FunFam Chromatin-remodeling complex ATPase 182 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4891g00003 Gabi-Chr4891 14901 23740 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4891g00003 202 623 RAD5 or RAD16-like Gene Family AT1G02670 27.525 4.59e-42 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi4891g00003 SNF2_N 1.1e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4891g00003 K11654 - gmx:100791510 1887.08