Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4891g00002 ATGGGGAAGCCTTTCGACAATCAGGTTTCGAACTCCTCAAATTCCGAAGAGGAGGAGGACGCCAACGCTCAGATCGAAGAGGATGACGAGGAGCTCGAAGCTGTGGCTCGCTCCACTAGCTCTGACGGCGAGGATAATGTGCCAGATGAAGAAGAAGCTGCTGGAGATGGCGACGAGGATAAACCGGTAAAACCTGAACCTGATGAAAGCAATGTTGATAATGAAATTAGCAAGCGTGAGAAGACCAGATTAAAAGAAATGGAAAAATTGAAGAAACAGAAGATTCAGGAGATATTGGATGAACAAAATGCAACCATTGATGCTGATATGAACAATAGGGGAAAGGGCCGATTGAAGTATCTTTTACAGCAAACTGAGCTATTTGCTCATTTTGCCAAAGGTGATCAATCTTCATCTCAAAAGAAGTCAAGGGGAAGGGGACGCCATGCATCAAAAGTGACTGAAGAAGAGGAAGATGAAGAATACCTTAAAGAAGAAGAAGTTGGTTTAGCAAACACGCGGCTGTTGACTCAACCATCATGTATCCAAGGAAAGATGAGGGATTACCAACTTGCGGGACTAAACTGGCTCATACGACTATATGAGAATGGAATAAATGGAATTCTGGCAGATGAAATGGGGCTTGGTAAAACCTTGCAAACTATATCTTTGTTGGCCTATTTACATGAGTTCAGAGGAATAACGGGTCCTCATATGGTGGTTGCTCCAAAATCAACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTATTTTACGTGCAGTAAAGTTCCTTGGTAACCCTGATGAAAGGAACCATATTAGAGAGGAGTTATTGGTTGCTGGTAAGTTTGATGTGTGCGTTACAAGTTTTGAAATGGTAATCAAGGAGAAGTCTACTTTACGTCGATTCAGTTGGCGTTACATAATTATTGATGAAGCTCATCGAATCAAGAATGAGAACTCCCTCCTTTCCAAAACGATGAGGCTATACAATACAAACTATCGACTTCTTATAACTGGCACACCATTACAGAACAATCTTCATGAACTCTGGGCTCTTCTCAACTTTCTTCTGCCTGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAATTACACAAGGTCCTCCGTCCATTTCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGTTTGCCACCAAAAAAGGAAACCATTCTCAAAGTAGGCATGTCGCAAATGCAGAAACAGTATTATAGAGCATTACTGCAGAAGGATCTTGAGGTTGTCAATGCTGGTGGAGAACGGAAACGCCTACTAAATATAGCAATGCAACTACGTAAATGTTGTAATCATCCATATCTCTTCCAAGGTGCTGAACCTGGTCCTCCGTATTCAACAGGAGACCATCTGATTACAAATGCTGGTAAAATGGTTCTACTGGATAAGTTACTTCCTAAACTAAAAGAACGTGATTCTAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTTGAAGATTATTTGATGTATTGCGGATATCAATATTGCCGCATAGATGGCAACACTGGCGGAGAAGATCGTGATGCTTCCATTGAGGCTTTCAACAAACCAGGAAGTGAGAAATTTGTCTTCTTGTTATCTACTCGGGCTGGAGGTCTTGGCATTAATCTTGCTACTGCTGATGTTGTCATTCTTTATGACAGTGACTGGAACCCACAAGCTGACTTGCAAGCTCAGGATCGAGCTCATAGAATTGGTCAAAAGAAAGAAGTTCAAGTTTTCCGATTTTGCACTGAGTATACAATTGAGGAAAAAGTCATAGAAAGGGCTTACAAAAAGCTTGCACTGGATGCATTGGTGATTCAGCAAGGTCGATTAGCTGAGCAAAAGACTGTAAATAAAGATGAGTTGATTCAAATGGTTAGATTTGGTGCTGAAATGGTTTTTAGTTGCAAGGACAGTACAATTACGGACGAGGATATTGACAGAATTATTGCTAAAGGAGAGGAAGCAACAGCTGAGCTTGATGCTAAGATGAAGAAATTTACTGAAGATGCTATCAAATTTAAGATGGATGACACTGCTGAGTTGTATGATTTTGATGATGAGAAGGATGAGAACAAAGTTGACTTCAAAAAACTCGTGAGTGACAACTGGGTTGAGCCACCAAAAAGAGAAAGGAAGCGCAATTACTCAGAATCTGAATACTTTAAGCAAACAATGCGGCAAGGTGGTCCTATTAAACCAAAAGGGCCCCGTATTCCTAAGATGCCTCCATTGCATGATTTCCAGTTTTTCAACACTCAAAGGCTGACTGAGCTGTATGAAAAGGAAGTTCGCTATCTTATGCAAACCCATCAGAAGAATCAGGTAAAAGACTCAATAGATGTTGATGAACAAGAAGAGGTGGGAGACCCATTGACTGCCGAAGAGTTGGAGGAAAAGGAGCACCTGCTAGAGGAGGGATTTTCATCATGGAGCCGGAAGGATTTTAATGCTTTCATTAGGGCCTGTGAAAAATATGGCCGAAATGATATAAAAAACATTGCTTCTGAGATGGAAGGAAAAACAGAGGAGGAAGTTGAAAGATATGCAAAAGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGATAGAATTATTAAAAACATTGAAAGAGGGGAGGTGAGAATATCTCGGAAAGATGAGATCATGAAAGCTATTGGGAAGAAGTTGGACCGCTACAAGAATCCTTGGCTTGAGTTGAAGATACAGTATGGACAAAACAAAGGAAAGTTATTCAATGAAGAATGTGACCGATTCATGATATGCATGGTTCACAAACTTGGCTATGGGAATTGGGATGAATTGAAGGCAGCATTTCGAACATCACCCTTGTTTCGTTTTGATTGGTTTTTAAAGTCTCGCACAACACAGGAACTAGCAAGGAGGTGTGACACCCTCGTTCGGCTGGTAGAGAAGGAAAACCAGGAATATGAGGAGAGGGAGAGACAAGCTCGTAAAGAGAAGAAACTTGCCAACAAGAGTATGACCCCATCAAAGCGTGCCTTGCCAAGACAGACGGATAGTCCATCTATGAAGAAGCGGAAGCAGTTAACTATGGATGACTATATAAGCTCGGGGAAGAGGAGAAAATAA 3186 0.4096 MGKPFDNQVSNSSNSEEEEDANAQIEEDDEELEAVARSTSSDGEDNVPDEEEAAGDGDEDKPVKPEPDESNVDNEISKREKTRLKEMEKLKKQKIQEILDEQNATIDADMNNRGKGRLKYLLQQTELFAHFAKGDQSSSQKKSRGRGRHASKVTEEEEDEEYLKEEEVGLANTRLLTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPILRAVKFLGNPDERNHIREELLVAGKFDVCVTSFEMVIKEKSTLRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYSTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYCGYQYCRIDGNTGGEDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELIQMVRFGAEMVFSCKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDENKVDFKKLVSDNWVEPPKRERKRNYSESEYFKQTMRQGGPIKPKGPRIPKMPPLHDFQFFNTQRLTELYEKEVRYLMQTHQKNQVKDSIDVDEQEEVGDPLTAEELEEKEHLLEEGFSSWSRKDFNAFIRACEKYGRNDIKNIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEVRISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLFNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFLKSRTTQELARRCDTLVRLVEKENQEYEERERQARKEKKLANKSMTPSKRALPRQTDSPSMKKRKQLTMDDYISSGKRRK 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4891g00002 1061 FunFam Chromatin-remodeling complex ATPase 187 402 - -
Gabi4891g00002 1061 Pfam HAND 750 832 IPR015194 GO:0003677|GO:0006338|GO:0031491
Gabi4891g00002 1061 Gene3D - 407 699 IPR027417 -
Gabi4891g00002 1061 ProSiteProfiles SANT domain profile. 836 888 IPR017884 -
Gabi4891g00002 1061 MobiDBLite consensus disorder prediction 1 84 - -
Gabi4891g00002 1061 Pfam SNF2-related domain 199 466 IPR000330 GO:0005524|GO:0140658
Gabi4891g00002 1061 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 72 1046 - -
Gabi4891g00002 1061 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 401 IPR027417 -
Gabi4891g00002 1061 CDD SF2_C_SNF 487 612 - -
Gabi4891g00002 1061 SUPERFAMILY Homeodomain-like 892 1014 IPR009057 -
Gabi4891g00002 1061 SUPERFAMILY Homeodomain-like 840 890 IPR009057 -
Gabi4891g00002 1061 CDD DEXHc_SMARCA1_SMARCA5 183 403 IPR044754 GO:0005524
Gabi4891g00002 1061 Gene3D - 837 891 - -
Gabi4891g00002 1061 Gene3D iswi atpase 892 924 - -
Gabi4891g00002 1061 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 403 684 IPR027417 -
Gabi4891g00002 1061 FunFam ISWI chromatin-remodeling complex ATPase CHR11 738 836 - -
Gabi4891g00002 1061 MobiDBLite consensus disorder prediction 19 33 - -
Gabi4891g00002 1061 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 749 839 IPR036306 GO:0003677|GO:0006338|GO:0031491
Gabi4891g00002 1061 FunFam ISWI chromatin-remodeling complex ATPase CHR11 925 1029 - -
Gabi4891g00002 1061 MobiDBLite consensus disorder prediction 132 159 - -
Gabi4891g00002 1061 MobiDBLite consensus disorder prediction 1 18 - -
Gabi4891g00002 1061 Gene3D - 187 402 IPR038718 -
Gabi4891g00002 1061 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 837 891 - -
Gabi4891g00002 1061 FunFam ISWI chromatin-remodeling complex ATPase CHR11 407 699 - -
Gabi4891g00002 1061 MobiDBLite consensus disorder prediction 57 84 - -
Gabi4891g00002 1061 MobiDBLite consensus disorder prediction 1008 1025 - -
Gabi4891g00002 1061 SMART ultradead3 182 374 IPR014001 -
Gabi4891g00002 1061 Pfam SLIDE 894 1004 IPR015195 GO:0003677|GO:0005634|GO:0006338
Gabi4891g00002 1061 Gene3D - 925 1028 - -
Gabi4891g00002 1061 CDD SANT 840 884 IPR001005 -
Gabi4891g00002 1061 Pfam Helicase conserved C-terminal domain 489 601 IPR001650 -
Gabi4891g00002 1061 MobiDBLite consensus disorder prediction 1037 1061 - -
Gabi4891g00002 1061 Coils Coil 994 1025 - -
Gabi4891g00002 1061 MobiDBLite consensus disorder prediction 1008 1061 - -
Gabi4891g00002 1061 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 491 642 IPR001650 -
Gabi4891g00002 1061 SMART sant 939 1000 IPR001005 -
Gabi4891g00002 1061 SMART sant 837 886 IPR001005 -
Gabi4891g00002 1061 Gene3D ISWI, HAND domain 738 836 IPR036306 GO:0003677|GO:0006338|GO:0031491
Gabi4891g00002 1061 SMART helicmild6 517 601 IPR001650 -
Gabi4891g00002 1061 Coils Coil 15 38 - -
Gabi4891g00002 1061 Coils Coil 77 104 - -
Gabi4891g00002 1061 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 198 363 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4891g00002 Gabi-Chr4891 14901 23740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4891g00002 207 628 RAD5 or RAD16-like Gene Family AT1G02670 27.525 5.91e-42 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi4891g00002 SNF2_N 1.1e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4891g00002 K11654 - gmx:100791510 1883.23