Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi488g00012 ATGTGCAGCGGTTCCAAGAGGAATCCTTCTCAAACTGGTTTGATTATGGAGGATGAGCATGGAAGACAAGAAGGGCTGCATCATAAAATTTCTGCTTTGCTTGAGTTTTCTGCTGCAGATGATGTAATAGGTTTCAAAGATGCTGTTGAAAAAGAGGGTCATGATGTTGATGAGGTGGGGTTGTGGTATGGAAGGAGGGTTGGTTCAAAGGAAGTGAGTTATGAAGAGAGGACCCCTCTTATGATTGCTGCAATGTTTGGAAGCAAGGGTGTTTTATCTTATATTCTTGGAACAGGCCTTGTTGATGTTAACAAGGCTTGTGGATCAGATGGGGCCACTGCCCTTCACTGTGCTGTTGCTGGGGTTTCTTCTTCTTGCCCTGAGGTTATCAAGCTTTTGCTTGATGCATCTGCAGATGTTAGTATTGTTGATGCCAATGGTAATCGTTGCTATGACTTGATTGTTTCTGTGTCTAATAATATCTTCAATTCAAGGAAGAGGATTCTACAAGCCATACTAGAAGGTGCAGATGGTATTGATCAGGAAGAAGTTGGCCTAATGGAGAAACGGCAACAGCAAGATGTAGATGTGCCTCGTGTTTCAAAAGATGGGACCGAGAAGAAAGATTATCCTGTTGATCTCTCTCTTCCAGACATAAAGAATGGGATATATGGTACTGATGAGTTTAGGATGTATATATTCAAAGTGAAGCCATGTTCAAGGGCTTATTCTCATGATTGGACTGAGTGCCCCTTTGTTCATCCAGGGGAAAATGCAAGACGTCGTGATCCGAGGAAATATCATTATAGCTGTGTCCCTTGCCCCGAGTTTAGGAAGGGATCATGCAGCAAGGGTGATGCTTGTGAATATGCGCATGGTATTTTTGAGTGCTGGCTTCACCCTGCTCAGTATCGAACAAGGCTTTGCAAGGATGAGACTGGATGCACCAGAAGAGTTTGCTTCTTTGCTCACAAGCTGGAGGAGCTTCGCCCTTTGTATGCCTCTACAGGTTCTGCTATGCCTTCTCCAAGATCATATTCAGCTGGTGCTTCATCATTGGATATGGATTCAGTTAGCTCTTTCACACTGGGATCTTCATCTGTCTTGATACCACCTGCTTCAACACCACCTTTGACTCCATCTGGAGCACCATCTTCTCCTGTGTGGCAGACTCAGTCTCATGTTGGAGTCCCTACCCTTCAACTGTCTAGAAGCAGATTGAAAAATGCATTCAATGCTAGAGATATTGATTTAGACATTGAATTGCTTGAACTTGGAAATCAAAGACTTATGCAACAGCTAATGATGGAAGAGATGGTTGGTCTTTCTTCCCCTTCCAAGTGGAAAAATTCCATGCCTAATAGTCCATCTTTTCCTGTCTCTTTGAGTGATCATAGTGGGGAGTTAAATAGGCTTGCAGGAGTGAAGCCTAGTACTAATCTTGAAGACATTTTTGGGTCTCATATACAATCTCCGACGGGAATCCAGCAACTGCGGGGCTATCCTTCCAACCTCTCTGCTTCAAATGTGATTGGATCACCATCATATAGGGTTGATCCATCCGGGACAGCTTCAAGAAAGGCTGCCTTTTCGAAGCGGAGCCAGAGCTTTATCGAGCGCGGTGGGGTGAGCTGTAATTCAGAGCTTCCTTCTCCTGCTATGGAGCCTTCTACCTTCTCTGGGTGGGGCTCCCCTGATGGAAAACTAGACTGGGCCATCCGTGGAGAAGAACTGAATAAGCTGAGGAAGTCTTCTTCTTTTGGATTTCGAAGCAGTAGTAATCCTTTAACAATGGCTTCAACCAGAGAACCAACAAATGTTGATGAACCAGATGTATCATGGGTTAATTCACTTGTGAAGGACGCTCCGCCAATGGAATCTGGTCAGCATAGTGTTGAAGAGCAGCAGCAACAGCAGCTTCAATGCCATGGTAACAATGGAACAGAAGTGGTTCCAGCTTGGCTGGAGCAATTGTACATGGAGCAGGAGCAGATGGTGGCTTGA 2004 0.4481 MCSGSKRNPSQTGLIMEDEHGRQEGLHHKISALLEFSAADDVIGFKDAVEKEGHDVDEVGLWYGRRVGSKEVSYEERTPLMIAAMFGSKGVLSYILGTGLVDVNKACGSDGATALHCAVAGVSSSCPEVIKLLLDASADVSIVDANGNRCYDLIVSVSNNIFNSRKRILQAILEGADGIDQEEVGLMEKRQQQDVDVPRVSKDGTEKKDYPVDLSLPDIKNGIYGTDEFRMYIFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDETGCTRRVCFFAHKLEELRPLYASTGSAMPSPRSYSAGASSLDMDSVSSFTLGSSSVLIPPASTPPLTPSGAPSSPVWQTQSHVGVPTLQLSRSRLKNAFNARDIDLDIELLELGNQRLMQQLMMEEMVGLSSPSKWKNSMPNSPSFPVSLSDHSGELNRLAGVKPSTNLEDIFGSHIQSPTGIQQLRGYPSNLSASNVIGSPSYRVDPSGTASRKAAFSKRSQSFIERGGVSCNSELPSPAMEPSTFSGWGSPDGKLDWAIRGEELNKLRKSSSFGFRSSSNPLTMASTREPTNVDEPDVSWVNSLVKDAPPMESGQHSVEEQQQQQLQCHGNNGTEVVPAWLEQLYMEQEQMVA 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi488g00012 667 ProSiteProfiles Ankyrin repeat region circular profile. 110 144 - -
Gabi488g00012 667 ProSiteProfiles Zinc finger C3H1-type profile. 273 295 IPR000571 GO:0046872
Gabi488g00012 667 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Gabi488g00012 667 FunFam Zinc finger CCCH domain-containing protein 66 226 294 - -
Gabi488g00012 667 SMART ANK_2a 110 142 IPR002110 GO:0005515
Gabi488g00012 667 SMART ANK_2a 75 105 IPR002110 GO:0005515
Gabi488g00012 667 MobiDBLite consensus disorder prediction 589 609 - -
Gabi488g00012 667 SMART c3hfinal6 268 294 IPR000571 GO:0046872
Gabi488g00012 667 SMART c3hfinal6 303 326 IPR000571 GO:0046872
Gabi488g00012 667 Gene3D - 268 331 - -
Gabi488g00012 667 Pfam Ankyrin repeats (3 copies) 68 143 IPR002110 GO:0005515
Gabi488g00012 667 Gene3D - 28 174 IPR036770 -
Gabi488g00012 667 PANTHER UNKEMPT FAMILY MEMBER 35 622 IPR045234 -
Gabi488g00012 667 SUPERFAMILY Ankyrin repeat 60 157 IPR036770 -
Gabi488g00012 667 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 273 293 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi488g00012 Gabi-Chr488 127731 130842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi488g00012 28 662 C2H2 Transcription Factor Family AT5G12850 39.130 3.06e-143 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi488g00012 Ank_2 2e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi488g00012 - - aprc:113846970 950.273