Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi488g00001 ATGGCTGTAGAGGGAGTGATGGATTCTCCAAGCAAGAAGCCTCAAGGAGGATTCGCCAAAAAGAAAATGTTCTTTGGAATCAATGAACGTGTTGAGTTGAGGAGTGCTGAGGATGGGTTTCTGGGGTCATGGCACCCGGGGATAGTTATCCACTGTGAGAAGCTAAAGCGCCTAGTCAGATATGATAATATCTTAGATGATGACGAGATTAATAATCTTGAGGAGTTAGTGCATGTTTCTGAAGCTTTGGATGGTCAAAGTAGCTCTTCAGATTTCTATAAGCGCGGTTTCATTAGGCCAGTGCCTCCTTTGATTGAGTTTGATAAAAGGAACCTTAAATTTGGTGTGTGTGTTGATGTGAACTATCAGGAAGCTTGGTGGGAAGGTGTTATATTTGATCACAATGATGAGAAGGAGGAGAGGAGTGTGTTTTTCCCTGATTTGGGTGATGAAATGAATGTTGAAATTCACCAACTTCGGATTACTCAGGACTGGGATGAAGTTGCAGAGAAGTGGGAGCAGCGAGGGAAATGGGTGTTTCTTGAATTGATTGAGGAGTGTGAGAGGACATCATTTGTTGGAGTTTCAGCAAAGCAGATTTGGTATGATGTACGGGGAAAAAGTGATTTTAACAGGATTGGGGAGTGGACATTCAATGTGAAGGACTTATGGAGAGACATGGTATTGGATGTTGTTGATGAGTACTTTTCTCTTACTGCAGAAGAAGTTTTCTCAGTCTTAAACCTTCCAAGGAGTTTATTCAATGAAACACCAGAGGTGGAGTCTGTTGAACCTGTAGCTAATGGGGACTTGAACACAACATTACCTGAAAAGGAAATTTTGATGCAGAAAGATCCTCTTCCTCCATTTGAAGAGGTCTTATCAGAGTTTCAAACTGAAATCCCCCCTGATGATGCTGGTGAAGAAGTTTCAGGTTCTAGCTGTTTTGAGAATAATAGAGAAAATATATCCTCAACTCGTTCAAGGTCCGGGCATTGGAAACCTCTTAAGTTTTCTGAAGTTGAATTATGTCCTGATGCTGTTAAGCAATATGCACTTGGTTCTAAGAGCATAGCAACTAGGAAACTTTGGACTAAAAAAGTACATAAACATCTTGCATACCTTGGATGGAAAATTGAGTGGACATCTAAATTTCGTGGGTATAAACGTTACAGGTACAAGTCACCTGATGAACAGGACCAGAAGTTTTACCTCTCACTCACTAAAGTTTGTAAAGTTATGCAAAATAACTCCAAAACAAACTTCTTGATGTCCCAAAATGATGAGAGTATAATGCATCATACCTTTGACTCCCATCTTTCACATGTGCCTCTTAATCCATCCGAAAAGATTCAGGATCCAGATACTTCTCTTGCAACTTTGCCACCTCCTCCTGTTGAAGTTGTAGATGAACCAGAATTTGCAGATGAACCGGCGTTTTGTCCTCAAGCTGTTGTGGAATATTATAATGCATTCAAAAAGAACAGGACTGATAAAAGAAAATGGATACAGAAAGCAAAGAAGCATCTGCTAGCAGAAGGATGGACTTTGGAACATCATCCAACTAATAAAAGAAGGGGAATTAAATATATATGTCCACAAAAGAAAATTTTTCTGACACTCCATGCAGCATGTGGATTTTGTATCAAAGAAAGCATTCCTAAATGGACTAATTCTGGCATGCAACTTGTAAATGAAAATGACTCAGTCATTAATGAGGAAAATGTTGATCAAGTTCAGAATGGTGATTTATTAAATAGAGTATCCCAATTGCCTCCGGAGAAACCTGCATTACATGGCATAGATGGCGTAGCTGCAAGTGGATCTACTGCAAATAGGAAGCGGAAACGCTTGAGTAATTCAAAGGCTAGCCTACCTAAGCGCCAAAGGAATGGATTACCTGTACGGGTGCTTAGATCAAGTAAAAGGGTGCAAGAGGTGTCTACCCCTTCTCTGTCACACCAGAAGCCACAAAATGTTTTGTCTTGGTTGATAGACCACAATGTAGTGCTACCAAGGTCTAAGGTTTATTACCTGGAAAAAAGCCGGTACCGTGCTATGGCTGAGGGGCGAATAACTCGTGATGGAATCAAATGTAACTGCTGTCAGACAGTTTACAGTCTTGTTGGCTTTGAAAAGCATGCTAGTGGTAGTAGTACCCCCAGACCTGCTGCTAATATCTTTTTGGAAGATTATGGTAGGTCACTCTTAGATTGCCAGATTCAAATAATGCAAGATTATAGGATAAGGGAAACTAAAGAAAAACCATGCAATGGTTTGTTTCAAGGGGAGAATGACTACATTTGTTCTGTTTGCCACTATGGTGGTGAACTTATTTTATGTGATCAATGTCCGTCTTCATTTCACAAGACATGTCTCGGTTTGGAGGATATCCCTGATGGTGACTGGTTTTGTCCATCGTGTCGTTGCGGGATTTGTGGCCAAAGCAAAATCAATGGAGATGAGGATGGACATTTCCTTGCTTGTACTCAGTGTGAAAATAAATATCATGTTAGGTGCGTGAAAAGTAGAGCTGTGGATGAATCAAGAAGGTATCAGGAAAACTGGTTCTGTGGAAAAAAGTGTGAAAAGATATATGAAGGCCTCAACAAACTGTTAGGAGTGCCAGTTACAGTGGGTTTGGGCAATCTAACTTGGACACTAGTGAAGTTCAGCAACTCTGAGAGTTGTAATCTTGGCAGTGCTAAAAGTGAATTGCTAGCAGAAAGTTACTGCAAACTCAACGTTGCTCTTTCAGTGATGCATGAATGTTTCGAGCCCCTAAAGGAACCTTTCTCTAGCAGAGATCTCGTGGAAGATGTTATATTCAGCAGATGGTCAGAGCTTAATCGGTTAAATTTCCAGGGTTTCTATACCGTACTTCTGGAA 2889 0.406 MAVEGVMDSPSKKPQGGFAKKKMFFGINERVELRSAEDGFLGSWHPGIVIHCEKLKRLVRYDNILDDDEINNLEELVHVSEALDGQSSSSDFYKRGFIRPVPPLIEFDKRNLKFGVCVDVNYQEAWWEGVIFDHNDEKEERSVFFPDLGDEMNVEIHQLRITQDWDEVAEKWEQRGKWVFLELIEECERTSFVGVSAKQIWYDVRGKSDFNRIGEWTFNVKDLWRDMVLDVVDEYFSLTAEEVFSVLNLPRSLFNETPEVESVEPVANGDLNTTLPEKEILMQKDPLPPFEEVLSEFQTEIPPDDAGEEVSGSSCFENNRENISSTRSRSGHWKPLKFSEVELCPDAVKQYALGSKSIATRKLWTKKVHKHLAYLGWKIEWTSKFRGYKRYRYKSPDEQDQKFYLSLTKVCKVMQNNSKTNFLMSQNDESIMHHTFDSHLSHVPLNPSEKIQDPDTSLATLPPPPVEVVDEPEFADEPAFCPQAVVEYYNAFKKNRTDKRKWIQKAKKHLLAEGWTLEHHPTNKRRGIKYICPQKKIFLTLHAACGFCIKESIPKWTNSGMQLVNENDSVINEENVDQVQNGDLLNRVSQLPPEKPALHGIDGVAASGSTANRKRKRLSNSKASLPKRQRNGLPVRVLRSSKRVQEVSTPSLSHQKPQNVLSWLIDHNVVLPRSKVYYLEKSRYRAMAEGRITRDGIKCNCCQTVYSLVGFEKHASGSSTPRPAANIFLEDYGRSLLDCQIQIMQDYRIRETKEKPCNGLFQGENDYICSVCHYGGELILCDQCPSSFHKTCLGLEDIPDGDWFCPSCRCGICGQSKINGDEDGHFLACTQCENKYHVRCVKSRAVDESRRYQENWFCGKKCEKIYEGLNKLLGVPVTVGLGNLTWTLVKFSNSESCNLGSAKSELLAESYCKLNVALSVMHECFEPLKEPFSSRDLVEDVIFSRWSELNRLNFQGFYTVLLE 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi488g00001 963 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 811 865 IPR013083 -
Gabi488g00001 963 CDD Tudor_Agenet_AtDUF_rpt1_3 25 103 - -
Gabi488g00001 963 SMART PHD_3 768 809 IPR001965 -
Gabi488g00001 963 SMART PHD_3 810 863 IPR001965 -
Gabi488g00001 963 Pfam Tify domain binding domain 690 742 IPR032308 -
Gabi488g00001 963 MobiDBLite consensus disorder prediction 596 630 - -
Gabi488g00001 963 CDD PHD2_CHD_II 769 808 - -
Gabi488g00001 963 Pfam Agenet domain 29 103 IPR008395 -
Gabi488g00001 963 SMART agenet_At_2 23 106 IPR014002 -
Gabi488g00001 963 SMART agenet_At_2 110 167 IPR014002 -
Gabi488g00001 963 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 760 810 IPR013083 -
Gabi488g00001 963 Pfam PHD-finger 768 810 IPR019787 -
Gabi488g00001 963 SUPERFAMILY FYVE/PHD zinc finger 810 859 IPR011011 -
Gabi488g00001 963 PANTHER PHD FINGER PROTEIN 12 478 963 IPR042163 GO:0003714|GO:0045892
Gabi488g00001 963 SUPERFAMILY FYVE/PHD zinc finger 749 809 IPR011011 -
Gabi488g00001 963 ProSiteProfiles Zinc finger PHD-type profile. 766 811 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi488g00001 Gabi-Chr488 5 5115 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi488g00001 602 963 PHD Transcription Factor Family AT5G58610 48.518 4.40e-102 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi488g00001 Agenet 1.6e-15 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi488g00001 - - gmx:100814680 1155.58