Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4888g00005 ATGGAAGATTGTTCCAAAAACACAAAATGGAATTACCATGTTTTCTTGAGTTTTAGGGGAGAAGACACACGCTTAGGTTTCACCGACCACTTGTATGCAGCTTTGGTGCGAAAGAGTATCATAACTTTTAGAGATGATGAAGAACTTGCCAGAGGTGAAGTCATCTCACAAAAACTCCTCCTTGCAATTGAGGAATCTCTCTCTGCAATTGTCATAATCTCCAAAAACTATGCTTCCTCATCTTGGTGTTTGGATGAGTTAGTTAAGATTCTTGAATCCAAACATGTGTTGGGTCAAGATGTGTTTCCAATCTTCTATGGTGTGGATCCCTCTGATGTAAGGAATCAGAGGGGAAGTTTTGCAGAAGCTTTTAGAAAACATGAAGAAAAGTTTATAGAAAACAAAGAGAAGGTGCAAAAATGGAGAGATGCATTAAAAGAAGTTGCCAACTTGTCAGGGTGGGACTCTAAGGATCAACATGAAACAACGCTCATTGAAGAAGTTGTTGCACAAGTATGGAAGAAACTAGAACCCAAATTCCCTACATATAACGATGGACTAGTTGGAATTGATACAAGATTAGAAGATTTATATTCAACTTTGAAGCTAGGATTGGAGGATGTTCGTTTCATAGGGATATGGGGCATGGGTGGTATAGGTAAAACAACTCTTGCTAATGCTCTTTTCAAAAAAATTAGAAGCCATTTTGATGTTAGTTGCTTTGTTGCTAATGTTAGAGAGGTCTCTGGGGAAAGAAACGAAGGTCTGATGCAGTTACAAAACAAAATTCTTTCTCATCTAAATATAAAAGGAATGGTAATTGAAACTTCAAGCCAAGGAAAGGACAGCTTAAGAAACCTTTTGTCCAACAAAAAGGTTCTTCTTGTCCTTGATGATGTAACTTCTAAAAGCCAACTTGAGAATTTGGCTGGAAACCAAGATTGGTTTGGTCCAGGGAGTAGAATTATAGTTACAACGAGGGATAAGCACCTGCTGATATCTCATGTAGTACTGTTTGAGATGTATGAGAGTAAAATCTTAAATGATAATGAATCCCTTCGACTCTTCTGTGAAAAAGCATTTAAAAGAAATGAACCTAAAGAGGATTATTTGGAGTTGGCTAAAAATGTTGTTGAATATGCTGGAGGCCTTCCTCTGGCTCTTGAAGTGTTGGGTTCTTTTCTTTGTGGAAGAAGTATATCTGATTGGGAAGATGCTTTGATTAAGATTAAACAAGTTCCACATGATGATATCCTAAACAAACTTAGAATAAGTTATGACATGTTAGAAGATGAGCACAAGACCATATTTCTAGATATTGCCTGTTTTTTTAAGGGATGGTACAAACATAAAGTGACGCAAATATTGGACAATTGCGGCCTTCATCCAACAATTGGATTAAATGTTCTTAGAGAAAAATCACTAGTAACTTACGATGGAAGAGTTATTGGGATGCACGATCTACTTGAAGAAATGGGTAAAACTATAGTTTTTCAAGAATCACCTAATGATCCTGGTAGACGGAGTAGATTGTGGTGTCTAGAGGATATTGATCATGCGCTGAAAAAAAATAAGGGAATGGAAATTGTCCAAGGTATAGTTTTGAAGTCAACACCATGTGAGCCGTATGAAGCACATTGGGATCCTGAGGCCTTTTCAAAAATGTTTAATCTTAGACTACTCATTGTATTATGTGATTTGCATCTTCCCCTTGGTCTCAAATGTCTTTCTAGCTCACTAAAAGTGCTTGTATGGTGGGGATATCCATTGAATACTCTACCACTTGGAGTTCAACTAGATGAGCTTGTTCACCTACAAATGATCAATAGCAAAATTAAGCAACTATGGAATGGAACTCAGTATGTTGGAAAGCTGAAAGTGATTGATTTGAGTAATTCCAAAGATCTACGACAAACTCCAAATGTTACTGGAGTTCCATATCTTGAAGAGATTTATCTTAAAGATTGTACAAAACTTGTTGAAGTTCACCAATCTATCGGACAACACAAAAAGCTCCGGATATTGAGCTTGATAGGATGTGTAAACCTTAAAACCTTTCCAAGTAAATTGGAAATGTGTTCCCTCAAAATGTTTTATCTTTCTGATTGCTCAAAGATTGAAAGACTTCCGAATTTGGGGGTAAATATGACATGCGTCTCAGTGCTTAATTTAATGAATTGCAAAAATCTTTTTTGCCTTCCAAATAGCATTGGTAACTTGAAGTCTCTCAGAATTCTCAACTTATCAGGATGCTCAAAAGTTTGTTGCCTGCCTGATAATATAAATCAAAACAAGGCTTTGGAGGATCTTGACTTGAGTGAAACTGCTATTAGAGAATTTGATCCATCCTTACTTCAGTTACAGAATATCAAAAGGTTATCTTTCAGGGGTTGTAGTGGGCCAGCATCCAACACCAGTAGGGGCTTGCATCTTCCTTTTGGGTTGAAATTTAGGTTTACCCCTGCTCCTACAAGCTTAATATTGTCTCCTTTTATTGCCTCGGGTCTTTCCTCATTAACTGTTTTGGATTTAAGTTATTGCAATCTCACTGATCGGTCAATTCCTCCTGATCTCCATTGCTTAACATCCTTGGAGAGACTAATTTTAAGTGGGAACAATTTTGTACACTTCCCTGAGCACCTCATTGCTAATATTCCAAGGCTTCGTAGTGTTGAATTGGAAGGTTGCCCACACCTTCAATTGTTGACTGTGCTTCCACCACATGTACGCTTGTATGTGAATGATTCAGCTGCATGGGGAGATACTTTATTAGATGAAGAAAAGCTTTGGACGCTGTTTGAATCAAGTGACAGAGAGCAATTTCAGTCAGCAAAATATATCATGGGGCGGGAACTTGATTGGCCGTTCAGTCCTGTGTACGTTAAAATCCCACCATGGCTTGATAATAAGGATTTTTTCCCCTTTAGCTCATCGTATGTGTCAAAACATGATTCAAGTGCAACAGTAATAGTGGACATTCCTGATGATTGTCGATCAAGTGATTTGTGGGGAGTTGCTGTATTTGTGTCCTTAGAAGCCGGAGTTCATTTTTTAGAATGGGATATTTTTGAACCAGTTCAGCTCAACATGCGCCTTTTTTGGAGCTTTGACTCTCTTGATCCTGAGGATGGCCCCTCCTTATCTCTTGCCTCAGCTTCAACAGCATATGATGACGTTTACCTGTTAACAATGGTAGTGTGTGGTGATTATATATACTTTCAGAGACACAGAAGAGGGAACAAGAAGTGCAACCATCGTCACTTTAACAACCATGCAAAGCCAGAGTTCAGGGAAAACAGTACGCTGAGTTTTAAAGTGCAAGTGGAAGGGCGCAATATAAGGAAGTGTGGGTGGGTTGTGTTACGCAAGGAAGATGGTCTTCAAGCCTTGCAAAATGTAAATGGCAACGAACTTTTTGAGACACCAAATCCCATTTATTGGAATGGTCCGAGGGAAATGCAGGAAAAACTGCTAGTGGATCGCATGGAACAAAGTGTTTTTGCTTCGTATCATCAGCTAATGTTCCTAAAAGCTAACCGCTTGTGGTGGGAAAAAATGTTTCAAAACATTAGAAAGGGAGTGGGTTTAAGCGTGGTAGCTTTGATGTCAATGATGGCCGTAGGGGGTACAATATTCCTGTCGCAAAGGCAGGGTTTTGGGTTTAAACTGCACACCACAACGAATGAGGCAACTGCTAAACTATTCAAATCACGTTGGGATTCCAATGGAAGTGGAATTAAGGTCAATAAACCGCAATTCCCACGCAAAAATAACACAAATGTGAGGCAGCGATTGTTGTTATCAGCACATCAGCAACCAAGGAAGCTGAGTTTGTCTCCGAGTCATTACTGTTCTTACTTGACAAGATGA 3870 0.3879 MEDCSKNTKWNYHVFLSFRGEDTRLGFTDHLYAALVRKSIITFRDDEELARGEVISQKLLLAIEESLSAIVIISKNYASSSWCLDELVKILESKHVLGQDVFPIFYGVDPSDVRNQRGSFAEAFRKHEEKFIENKEKVQKWRDALKEVANLSGWDSKDQHETTLIEEVVAQVWKKLEPKFPTYNDGLVGIDTRLEDLYSTLKLGLEDVRFIGIWGMGGIGKTTLANALFKKIRSHFDVSCFVANVREVSGERNEGLMQLQNKILSHLNIKGMVIETSSQGKDSLRNLLSNKKVLLVLDDVTSKSQLENLAGNQDWFGPGSRIIVTTRDKHLLISHVVLFEMYESKILNDNESLRLFCEKAFKRNEPKEDYLELAKNVVEYAGGLPLALEVLGSFLCGRSISDWEDALIKIKQVPHDDILNKLRISYDMLEDEHKTIFLDIACFFKGWYKHKVTQILDNCGLHPTIGLNVLREKSLVTYDGRVIGMHDLLEEMGKTIVFQESPNDPGRRSRLWCLEDIDHALKKNKGMEIVQGIVLKSTPCEPYEAHWDPEAFSKMFNLRLLIVLCDLHLPLGLKCLSSSLKVLVWWGYPLNTLPLGVQLDELVHLQMINSKIKQLWNGTQYVGKLKVIDLSNSKDLRQTPNVTGVPYLEEIYLKDCTKLVEVHQSIGQHKKLRILSLIGCVNLKTFPSKLEMCSLKMFYLSDCSKIERLPNLGVNMTCVSVLNLMNCKNLFCLPNSIGNLKSLRILNLSGCSKVCCLPDNINQNKALEDLDLSETAIREFDPSLLQLQNIKRLSFRGCSGPASNTSRGLHLPFGLKFRFTPAPTSLILSPFIASGLSSLTVLDLSYCNLTDRSIPPDLHCLTSLERLILSGNNFVHFPEHLIANIPRLRSVELEGCPHLQLLTVLPPHVRLYVNDSAAWGDTLLDEEKLWTLFESSDREQFQSAKYIMGRELDWPFSPVYVKIPPWLDNKDFFPFSSSYVSKHDSSATVIVDIPDDCRSSDLWGVAVFVSLEAGVHFLEWDIFEPVQLNMRLFWSFDSLDPEDGPSLSLASASTAYDDVYLLTMVVCGDYIYFQRHRRGNKKCNHRHFNNHAKPEFRENSTLSFKVQVEGRNIRKCGWVVLRKEDGLQALQNVNGNELFETPNPIYWNGPREMQEKLLVDRMEQSVFASYHQLMFLKANRLWWEKMFQNIRKGVGLSVVALMSMMAVGGTIFLSQRQGFGFKLHTTTNEATAKLFKSRWDSNGSGIKVNKPQFPRKNNTNVRQRLLLSAHQQPRKLSLSPSHYCSYLTR 1289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4888g00005 1289 SMART till_3 11 151 IPR000157 GO:0007165
Gabi4888g00005 1289 SMART AAA_5 207 347 IPR003593 GO:0016887
Gabi4888g00005 1289 SMART LRR_typ_2 836 860 IPR003591 -
Gabi4888g00005 1289 SMART LRR_typ_2 861 884 IPR003591 -
Gabi4888g00005 1289 SUPERFAMILY L domain-like 485 902 - -
Gabi4888g00005 1289 FunFam Disease resistance protein (TIR-NBS-LRR class) 348 430 - -
Gabi4888g00005 1289 Gene3D Ribonuclease Inhibitor 546 692 IPR032675 -
Gabi4888g00005 1289 Gene3D Ribonuclease Inhibitor 693 761 IPR032675 -
Gabi4888g00005 1289 Gene3D - 8 176 IPR035897 -
Gabi4888g00005 1289 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 154 IPR035897 -
Gabi4888g00005 1289 Gene3D Ribonuclease Inhibitor 762 915 IPR032675 -
Gabi4888g00005 1289 ProSiteProfiles TIR domain profile. 10 176 IPR000157 GO:0007165
Gabi4888g00005 1289 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 710 IPR044974 GO:0006952
Gabi4888g00005 1289 PRINTS Disease resistance protein signature 381 395 - -
Gabi4888g00005 1289 PRINTS Disease resistance protein signature 287 301 - -
Gabi4888g00005 1289 PRINTS Disease resistance protein signature 210 225 - -
Gabi4888g00005 1289 PRINTS Disease resistance protein signature 738 754 - -
Gabi4888g00005 1289 Gene3D - 177 337 IPR027417 -
Gabi4888g00005 1289 Gene3D - 346 430 IPR042197 -
Gabi4888g00005 1289 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 178 - -
Gabi4888g00005 1289 Pfam TIR domain 11 185 IPR000157 GO:0007165
Gabi4888g00005 1289 Pfam NB-ARC domain 206 412 IPR002182 GO:0043531
Gabi4888g00005 1289 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 440 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4888g00005 Gabi-Chr4888 100709 105622 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4888g00005 11 795 WRKY Transcription Factor Family AT4G12020 31.681 1.24e-94 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4888g00005 - - vvo:131658213 1742.63